Results 41 - 60 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 40658 | 0.72 | 0.997861 |
Target: 5'- gGGGAGGGggGCgCGGGgGAgGGGAGGg -3' miRNA: 3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143679 | 0.72 | 0.997861 |
Target: 5'- ----uGGggGCUCGGGCGACGGAc-- -3' miRNA: 3'- ccuuuCCuuUGGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 76530 | 0.72 | 0.998515 |
Target: 5'- cGGcGAGGAcgcccugGGCCCGGACGGCc----- -3' miRNA: 3'- -CCuUUCCU-------UUGGGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143279 | 0.72 | 0.998515 |
Target: 5'- cGGAAGGGAccgccgcacccccGACCCccGGcGCGGCGGAGAc -3' miRNA: 3'- -CCUUUCCU-------------UUGGG--UC-UGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 100128 | 0.72 | 0.998544 |
Target: 5'- gGGAGGGGAGgcguggcgGCgCGGGCGGCGGGGc- -3' miRNA: 3'- -CCUUUCCUU--------UGgGUCUGCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 40756 | 0.72 | 0.998544 |
Target: 5'- gGGGAGGGggGCgCGGGgGAgGGGAGGu -3' miRNA: 3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 62787 | 0.72 | 0.998544 |
Target: 5'- gGGAAcAGGggGCCgCGGAUGAUggGc-- -3' miRNA: 3'- -CCUU-UCCuuUGG-GUCUGCUGuuUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 96863 | 0.71 | 0.99881 |
Target: 5'- gGGGAccccGGGAcccggccggAACCCAGACGACc----- -3' miRNA: 3'- -CCUU----UCCU---------UUGGGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 82029 | 0.71 | 0.99881 |
Target: 5'- cGGggGGGAcGCCguCGGGCGcCGGAAAGc -3' miRNA: 3'- -CCuuUCCUuUGG--GUCUGCuGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 6017 | 0.71 | 0.99881 |
Target: 5'- gGGAAGGGGGACgCGGGCaGCGAc--- -3' miRNA: 3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 5054 | 0.71 | 0.999033 |
Target: 5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3' miRNA: 3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 105637 | 0.71 | 0.999033 |
Target: 5'- gGGAAGGGAGGCCgCGGAggcUGGCGu---- -3' miRNA: 3'- -CCUUUCCUUUGG-GUCU---GCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 19762 | 0.71 | 0.999033 |
Target: 5'- cGGugcGGGGGuCCCAGGCGACGc---- -3' miRNA: 3'- -CCuu-UCCUUuGGGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 129649 | 0.71 | 0.999033 |
Target: 5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3' miRNA: 3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 142040 | 0.71 | 0.999033 |
Target: 5'- aGGAcGAGGAcgagcaGGcCCCGGGCGACGAGc-- -3' miRNA: 3'- -CCU-UUCCU------UU-GGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143508 | 0.71 | 0.999033 |
Target: 5'- cGGcGAGGcGGGCCCGGGCGuACGAGc-- -3' miRNA: 3'- -CCuUUCC-UUUGGGUCUGC-UGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 49617 | 0.71 | 0.999033 |
Target: 5'- uGGGAGGGgcGCCCgcgGGGCGGgAGGGGGa -3' miRNA: 3'- -CCUUUCCuuUGGG---UCUGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 4140 | 0.71 | 0.999033 |
Target: 5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3' miRNA: 3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 124645 | 0.71 | 0.999033 |
Target: 5'- cGGggGGcGAGAUCCuGGGCGACGu---- -3' miRNA: 3'- -CCuuUC-CUUUGGG-UCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 35955 | 0.71 | 0.999033 |
Target: 5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3' miRNA: 3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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