Results 61 - 80 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 27005 | 0.71 | 0.999111 |
Target: 5'- cGGGGAGGAcGGCCCcgccggggccgcgggGGAgGACGAGGAc -3' miRNA: 3'- -CCUUUCCU-UUGGG---------------UCUgCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 152514 | 0.71 | 0.999111 |
Target: 5'- cGGGGAGGAcGGCCCcgccggggccgcgggGGAgGACGAGGAc -3' miRNA: 3'- -CCUUUCCU-UUGGG---------------UCUgCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 110644 | 0.71 | 0.999219 |
Target: 5'- cGGGgcGGAGACgCGGGCGGgGAGGGGu -3' miRNA: 3'- -CCUuuCCUUUGgGUCUGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 45359 | 0.71 | 0.999219 |
Target: 5'- cGGGuugcGGGGAAACUCGGGCGugGu---- -3' miRNA: 3'- -CCU----UUCCUUUGGGUCUGCugUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 144623 | 0.71 | 0.999219 |
Target: 5'- cGGAGcccgccGGcGGAACCCcgcccccgcgGGACGACGAGGAGg -3' miRNA: 3'- -CCUU------UC-CUUUGGG----------UCUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 36918 | 0.71 | 0.999219 |
Target: 5'- gGGGAAGGGGACgCGGGCaGCGAc--- -3' miRNA: 3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 9672 | 0.71 | 0.999359 |
Target: 5'- cGGAcccacgagcccgcGAGGAAACCCAGAgGAa------ -3' miRNA: 3'- -CCU-------------UUCCUUUGGGUCUgCUguuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 31117 | 0.71 | 0.999374 |
Target: 5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3' miRNA: 3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 57263 | 0.71 | 0.999374 |
Target: 5'- gGGggGGGggG---GGGCGACAAGGGAa -3' miRNA: 3'- -CCuuUCCuuUgggUCUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 216 | 0.71 | 0.999374 |
Target: 5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3' miRNA: 3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 45461 | 0.71 | 0.999374 |
Target: 5'- cGGggGGGcgagGAGCCCGaGCGGCAGc--- -3' miRNA: 3'- -CCuuUCC----UUUGGGUcUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 50646 | 0.71 | 0.999374 |
Target: 5'- uGGggGGcGggGCCCGG-CGACu----- -3' miRNA: 3'- -CCuuUC-CuuUGGGUCuGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 89514 | 0.7 | 0.999501 |
Target: 5'- uGGAGAGcGAGCUgguguuugCGGGCGACGAGGAGg -3' miRNA: 3'- -CCUUUCcUUUGG--------GUCUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 30766 | 0.7 | 0.999501 |
Target: 5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3' miRNA: 3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 98896 | 0.7 | 0.999501 |
Target: 5'- cGGAAAGaGggGCgCGGuggcGCGGCAGAAGc -3' miRNA: 3'- -CCUUUC-CuuUGgGUC----UGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 156274 | 0.7 | 0.999501 |
Target: 5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3' miRNA: 3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 62147 | 0.7 | 0.999501 |
Target: 5'- cGGcGAGGgcGCCCAGggaaACGAgGAAGAGc -3' miRNA: 3'- -CCuUUCCuuUGGGUC----UGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 146659 | 0.7 | 0.999605 |
Target: 5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3' miRNA: 3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 147256 | 0.7 | 0.999605 |
Target: 5'- --cGAGGAAACC--GGCGGCGAAGAGg -3' miRNA: 3'- ccuUUCCUUUGGguCUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 76894 | 0.7 | 0.999605 |
Target: 5'- cGGAGGGugGCCaGGACGGCGGGGGc -3' miRNA: 3'- cCUUUCCuuUGGgUCUGCUGUUUUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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