miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 108625 0.7 0.999666
Target:  5'- cGAAGGGGuaguacggguccauGGCCCGuccGGCGGCAGGGAGg -3'
miRNA:   3'- cCUUUCCU--------------UUGGGU---CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 35573 0.7 0.99969
Target:  5'- aGGGAGGGGGcggcgggggcACCC-GACGGCGAc--- -3'
miRNA:   3'- -CCUUUCCUU----------UGGGuCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 10165 0.7 0.999758
Target:  5'- cGGggGGGggGCguUCGcGACGACGAc--- -3'
miRNA:   3'- -CCuuUCCuuUG--GGU-CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 108547 0.69 0.999813
Target:  5'- cGggGGGAAACUCGGGgGugAuGAAGg -3'
miRNA:   3'- cCuuUCCUUUGGGUCUgCugUuUUUU- -5'
21715 5' -44.3 NC_004812.1 + 151056 0.69 0.999813
Target:  5'- cGGAccccGAGG-AGCCCGacGACGACGAc--- -3'
miRNA:   3'- -CCU----UUCCuUUGGGU--CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 105233 0.69 0.999813
Target:  5'- -cGAAGGAcACCCGGGCgGGCGAc--- -3'
miRNA:   3'- ccUUUCCUuUGGGUCUG-CUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 57352 0.69 0.999813
Target:  5'- gGGAGAGGAAGCagGGAaaGACGAGAc- -3'
miRNA:   3'- -CCUUUCCUUUGggUCUg-CUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 25548 0.69 0.999813
Target:  5'- cGGAccccGAGG-AGCCCGacGACGACGAc--- -3'
miRNA:   3'- -CCU----UUCCuUUGGGU--CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 96345 0.69 0.999813
Target:  5'- cGGAAAGGcgGCCCAGGgGGg------ -3'
miRNA:   3'- -CCUUUCCuuUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 36186 0.69 0.999856
Target:  5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3'
miRNA:   3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 125174 0.69 0.999856
Target:  5'- gGGAGgcGGGAgGGCCCGGGCGcGCGGGc-- -3'
miRNA:   3'- -CCUU--UCCU-UUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 5285 0.69 0.999856
Target:  5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3'
miRNA:   3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156075 0.69 0.999856
Target:  5'- gGGAGgcGGGAgGGCCCGGGCGcGCGGGc-- -3'
miRNA:   3'- -CCUU--UCCU-UUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 114947 0.69 0.999856
Target:  5'- gGGAAAGuGGACgCGG-CGGCAAGAAAg -3'
miRNA:   3'- -CCUUUCcUUUGgGUCuGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 45776 0.69 0.999891
Target:  5'- gGGAAAguGGGuuUCCAGACaGGCGAGGAu -3'
miRNA:   3'- -CCUUU--CCUuuGGGUCUG-CUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 156200 0.69 0.999891
Target:  5'- gGGGGAGGggGCCgCuggggagagGGACGGgGGGGAGa -3'
miRNA:   3'- -CCUUUCCuuUGG-G---------UCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 139694 0.69 0.999891
Target:  5'- -aGGAGGggGCCgGaGACGGCGAGc-- -3'
miRNA:   3'- ccUUUCCuuUGGgU-CUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 30692 0.69 0.999891
Target:  5'- gGGGGAGGggGCCgCuggggagagGGACGGgGGGGAGa -3'
miRNA:   3'- -CCUUUCCuuUGG-G---------UCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 130783 0.69 0.999891
Target:  5'- cGAGGcGGcGACCCAGAaccaGGCGGAGAGc -3'
miRNA:   3'- cCUUU-CCuUUGGGUCUg---CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 23895 0.69 0.999918
Target:  5'- gGGAGucGGAcgucGGCCgGGACGACGAc--- -3'
miRNA:   3'- -CCUUu-CCU----UUGGgUCUGCUGUUuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.