miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 23895 0.69 0.999918
Target:  5'- gGGAGucGGAcgucGGCCgGGACGACGAc--- -3'
miRNA:   3'- -CCUUu-CCU----UUGGgUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 89717 0.69 0.999924
Target:  5'- cGGGGAGGAgcugcuccugcacaaAGCCCGGcuggcguGCGGCAAcGAGu -3'
miRNA:   3'- -CCUUUCCU---------------UUGGGUC-------UGCUGUUuUUU- -5'
21715 5' -44.3 NC_004812.1 + 20856 0.69 0.999935
Target:  5'- cGGAGGGGGGcucguggccccuCCCGGACGGCc----- -3'
miRNA:   3'- -CCUUUCCUUu-----------GGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 68342 0.69 0.999936
Target:  5'- aGAGccAGGAGGCCCgggucgaAGGCGACAu---- -3'
miRNA:   3'- cCUU--UCCUUUGGG-------UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 50524 0.69 0.999938
Target:  5'- cGGAcaGAGGAGGCgCAGgccGCGACAc---- -3'
miRNA:   3'- -CCU--UUCCUUUGgGUC---UGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 2463 0.69 0.999938
Target:  5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3'
miRNA:   3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 98837 0.69 0.999938
Target:  5'- aGAcGGGcgGCgCGGACGGCGGGGAGg -3'
miRNA:   3'- cCUuUCCuuUGgGUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 118640 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 92236 0.69 0.999938
Target:  5'- gGGAGAGGGuguGGCCUGGcGgGGCGGAGGAg -3'
miRNA:   3'- -CCUUUCCU---UUGGGUC-UgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 149541 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 33364 0.69 0.999938
Target:  5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3'
miRNA:   3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 103417 0.68 0.999954
Target:  5'- cGGcccAGAGGAucuCCCuGACGAgAAAGAGg -3'
miRNA:   3'- -CC---UUUCCUuu-GGGuCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 78869 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 121315 0.68 0.999954
Target:  5'- cGgcGGGAccACCCGGGCGACGc---- -3'
miRNA:   3'- cCuuUCCUu-UGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 80715 0.68 0.999954
Target:  5'- gGGGAAGGGAcgaaacGCCgAGGCG-CGGAAc- -3'
miRNA:   3'- -CCUUUCCUU------UGGgUCUGCuGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 78908 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 78753 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 78675 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 18388 0.68 0.999954
Target:  5'- cGGAGGGGAAACCCcucgAGcCGAUc----- -3'
miRNA:   3'- -CCUUUCCUUUGGG----UCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 135841 0.68 0.999954
Target:  5'- uGGGAcucggcgucGGGggGCUCGGAgGGCAAc--- -3'
miRNA:   3'- -CCUU---------UCCuuUGGGUCUgCUGUUuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.