miRNA display CGI


Results 121 - 140 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 135841 0.68 0.999954
Target:  5'- uGGGAcucggcgucGGGggGCUCGGAgGGCAAc--- -3'
miRNA:   3'- -CCUU---------UCCuuUGGGUCUgCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 138529 0.68 0.999954
Target:  5'- ----cGGcgGCCCGGACGGCGGc--- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 25935 0.68 0.999954
Target:  5'- cGGAgucgGAGGAccgGGCCCGGACcGCGGGc-- -3'
miRNA:   3'- -CCU----UUCCU---UUGGGUCUGcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 145288 0.68 0.999965
Target:  5'- cGGggGGGugugcgguguggcGGGCCCGGugGGCcGAu-- -3'
miRNA:   3'- -CCuuUCC-------------UUUGGGUCugCUGuUUuuu -5'
21715 5' -44.3 NC_004812.1 + 102389 0.68 0.999966
Target:  5'- cGGAGGGGGGcacgacggaagcGCCCgcGGGCGGCGu---- -3'
miRNA:   3'- -CCUUUCCUU------------UGGG--UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 155525 0.68 0.999966
Target:  5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3'
miRNA:   3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 124624 0.68 0.999966
Target:  5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3'
miRNA:   3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 114119 0.68 0.999966
Target:  5'- gGGGAAGGGAACggaaaccggaaaCCAGaACGGCGucgGGAGAu -3'
miRNA:   3'- -CCUUUCCUUUG------------GGUC-UGCUGU---UUUUU- -5'
21715 5' -44.3 NC_004812.1 + 18217 0.68 0.999966
Target:  5'- cGGuaguAGGccACCCGGGCGGCGu---- -3'
miRNA:   3'- -CCuu--UCCuuUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 93533 0.68 0.999975
Target:  5'- aGGAgcggccgGAGGggGCCguGGgGGCGGAGc- -3'
miRNA:   3'- -CCU-------UUCCuuUGGguCUgCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 12288 0.68 0.999975
Target:  5'- cGGggGGGcggagcgAAACCCAcGACGGCc----- -3'
miRNA:   3'- -CCuuUCC-------UUUGGGU-CUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 141470 0.68 0.999976
Target:  5'- ---cGGGGAGCCCccgAGGCGACGc---- -3'
miRNA:   3'- ccuuUCCUUUGGG---UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 7595 0.68 0.999976
Target:  5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3'
miRNA:   3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 116906 0.68 0.999976
Target:  5'- cGAGAGu-AGCCCGGGCGGgAGGGGGa -3'
miRNA:   3'- cCUUUCcuUUGGGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 9670 0.68 0.999976
Target:  5'- gGGAGGGGGAcgGCCCGGAacgcgucacguuCGACu----- -3'
miRNA:   3'- -CCUUUCCUU--UGGGUCU------------GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 147807 0.68 0.999976
Target:  5'- cGAGAGu-AGCCCGGGCGGgAGGGGGa -3'
miRNA:   3'- cCUUUCcuUUGGGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 67317 0.68 0.999976
Target:  5'- cGGGGAGGcGAGCgCGGGCGcucACAGAAc- -3'
miRNA:   3'- -CCUUUCC-UUUGgGUCUGC---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 38496 0.68 0.999976
Target:  5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3'
miRNA:   3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 98516 0.68 0.999982
Target:  5'- cGGGucccGGGcgGCCCcGGCGACGAGc-- -3'
miRNA:   3'- -CCUu---UCCuuUGGGuCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 60152 0.68 0.999982
Target:  5'- aGGAGGGG----CCAGGCGGCGAu--- -3'
miRNA:   3'- -CCUUUCCuuugGGUCUGCUGUUuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.