miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 76463 0.67 0.999996
Target:  5'- aGGGcgacGAGGAAGgCCAGGgGGCAc---- -3'
miRNA:   3'- -CCU----UUCCUUUgGGUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 143666 0.67 0.999996
Target:  5'- cGGAAGaaucGGAGGCCCcGGCGAUc----- -3'
miRNA:   3'- -CCUUU----CCUUUGGGuCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 21086 0.67 0.999996
Target:  5'- ----cGGcgGCCgAGGCGGCGAAGAc -3'
miRNA:   3'- ccuuuCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 112119 0.67 0.999996
Target:  5'- cGAGcAGGAGAUCCAG-CGGCGc---- -3'
miRNA:   3'- cCUU-UCCUUUGGGUCuGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 115749 0.67 0.999996
Target:  5'- uGGccGGAGGAGGgUCGGGCGGCAc---- -3'
miRNA:   3'- -CC--UUUCCUUUgGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 86350 0.67 0.999996
Target:  5'- aGAGAGGAgaGAgCCGGGCGgugcgcgcuggguggGCGGAAGAg -3'
miRNA:   3'- cCUUUCCU--UUgGGUCUGC---------------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 1432 0.67 0.999996
Target:  5'- cGGGGAGG-GGCCgGGGCcGCGAGGGc -3'
miRNA:   3'- -CCUUUCCuUUGGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 64127 0.67 0.999996
Target:  5'- cGGggGGGAgGACgCGGACG-CGAu--- -3'
miRNA:   3'- -CCuuUCCU-UUGgGUCUGCuGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 13259 0.67 0.999994
Target:  5'- ---cGGGAGGCCUccgacgucgGGGCGGCGGAGGc -3'
miRNA:   3'- ccuuUCCUUUGGG---------UCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 5390 0.67 0.999994
Target:  5'- cGGGAGGGggGucggggucuCCCAGggacGCGGCGGGc-- -3'
miRNA:   3'- -CCUUUCCuuU---------GGGUC----UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 98977 0.67 0.999994
Target:  5'- -----cGAGGCCCAGAUGACGu---- -3'
miRNA:   3'- ccuuucCUUUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 30865 0.67 0.999994
Target:  5'- gGGGGAGGAGAgCgGGGCcGCGGGGGc -3'
miRNA:   3'- -CCUUUCCUUUgGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 11467 0.67 0.999994
Target:  5'- gGGAAAGGAAGaaaCGGaACGugGGAAu- -3'
miRNA:   3'- -CCUUUCCUUUgg-GUC-UGCugUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 105430 0.67 0.999994
Target:  5'- gGGGAAGGAAcGCUCGGuGCG-CGGGGAGg -3'
miRNA:   3'- -CCUUUCCUU-UGGGUC-UGCuGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156373 0.67 0.999994
Target:  5'- gGGGGAGGAGAgCgGGGCcGCGGGGGc -3'
miRNA:   3'- -CCUUUCCUUUgGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 36291 0.67 0.999994
Target:  5'- cGGGAGGGggGucggggucuCCCAGggacGCGGCGGGc-- -3'
miRNA:   3'- -CCUUUCCuuU---------GGGUC----UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 26260 0.67 0.999992
Target:  5'- gGGAcucGGGGGAcgcggccgcgcggguGCCCcgcGGCGACAGGGGAa -3'
miRNA:   3'- -CCU---UUCCUU---------------UGGGu--CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 128546 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 106568 0.67 0.999991
Target:  5'- aGGGAGGAGgcGCCCGGGCcgGGCGcAGAc -3'
miRNA:   3'- cCUUUCCUU--UGGGUCUG--CUGUuUUUu -5'
21715 5' -44.3 NC_004812.1 + 19552 0.67 0.999991
Target:  5'- uGGAucGcGAAGCCCAGGcCGGCc----- -3'
miRNA:   3'- -CCUuuC-CUUUGGGUCU-GCUGuuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.