miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 31501 0.67 0.999991
Target:  5'- uGGAGGGcgGCUCGGAUGGCGc---- -3'
miRNA:   3'- cCUUUCCuuUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 26684 0.67 0.999991
Target:  5'- uGGAGGGcGggGCUgcgUAGGCGGCGAcgGAu -3'
miRNA:   3'- -CCUUUC-CuuUGG---GUCUGCUGUUuuUU- -5'
21715 5' -44.3 NC_004812.1 + 54136 0.67 0.999991
Target:  5'- cGGAGGGGGGuggggugggcuCCCGG-CGGCGGGAc- -3'
miRNA:   3'- -CCUUUCCUUu----------GGGUCuGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 17607 0.67 0.999991
Target:  5'- gGGcGAGGcGGGCCCGGGCGAa------ -3'
miRNA:   3'- -CCuUUCC-UUUGGGUCUGCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 128546 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 10128 0.67 0.999991
Target:  5'- gGGAAaagcaaagguggcAGGGAGCgaCAGACGGCGAn--- -3'
miRNA:   3'- -CCUU-------------UCCUUUGg-GUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 19552 0.67 0.999991
Target:  5'- uGGAucGcGAAGCCCAGGcCGGCc----- -3'
miRNA:   3'- -CCUuuC-CUUUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 3037 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 30354 0.67 0.999987
Target:  5'- cGGGAGGcGAGGCgCGcGCGGCGGGGGAg -3'
miRNA:   3'- -CCUUUC-CUUUGgGUcUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 125247 0.67 0.999987
Target:  5'- cGAucGAGGAGGCCCcGGcCGACGAc--- -3'
miRNA:   3'- cCU--UUCCUUUGGGuCU-GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 104312 0.67 0.999987
Target:  5'- cGGcgGGGAcggcGCCUccggGGGCGGCGAGGAGg -3'
miRNA:   3'- -CCuuUCCUu---UGGG----UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 86801 0.67 0.999987
Target:  5'- gGGAGAGGAGGa--GGGCGGCGGc--- -3'
miRNA:   3'- -CCUUUCCUUUgggUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 86721 0.67 0.999987
Target:  5'- -cGGAGGAGcGgCCGGACGACGAc--- -3'
miRNA:   3'- ccUUUCCUU-UgGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 155862 0.67 0.999987
Target:  5'- cGGGAGGcGAGGCgCGcGCGGCGGGGGAg -3'
miRNA:   3'- -CCUUUC-CUUUGgGUcUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 84975 0.67 0.999987
Target:  5'- cGGGuguuGGAGGCCUcGACGAUggGGu- -3'
miRNA:   3'- -CCUuu--CCUUUGGGuCUGCUGuuUUuu -5'
21715 5' -44.3 NC_004812.1 + 151443 0.67 0.999987
Target:  5'- cGGAgucgGAGGAcucgGGCCCGGACcGCGGGc-- -3'
miRNA:   3'- -CCU----UUCCU----UUGGGUCUGcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 10727 0.68 0.999982
Target:  5'- gGGGAGGGgcGgCgGGGCGGCAAc--- -3'
miRNA:   3'- -CCUUUCCuuUgGgUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 152843 0.68 0.999982
Target:  5'- -cGGGGGGGACUUGGGCGGCGGGc-- -3'
miRNA:   3'- ccUUUCCUUUGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 57416 0.68 0.999982
Target:  5'- uGGAccGGggG-CCGGGCGGCAc---- -3'
miRNA:   3'- -CCUuuCCuuUgGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 24908 0.68 0.999982
Target:  5'- gGGAAGGGAAggggguugauGCUaaugagAGACGACAGGGGc -3'
miRNA:   3'- -CCUUUCCUU----------UGGg-----UCUGCUGUUUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.