miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 35760 0.66 0.999999
Target:  5'- gGGGAGGGGccgcGGCCCGcGCGAgAAAc-- -3'
miRNA:   3'- -CCUUUCCU----UUGGGUcUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 35955 0.71 0.999033
Target:  5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3'
miRNA:   3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 36186 0.69 0.999856
Target:  5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3'
miRNA:   3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 36246 0.79 0.8954
Target:  5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3'
miRNA:   3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 36291 0.67 0.999994
Target:  5'- cGGGAGGGggGucggggucuCCCAGggacGCGGCGGGc-- -3'
miRNA:   3'- -CCUUUCCuuU---------GGGUC----UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 36633 0.66 0.999999
Target:  5'- cGGGAGGAGggcgccgggcgccGCCCAGGCccACAGGGAc -3'
miRNA:   3'- cCUUUCCUU-------------UGGGUCUGc-UGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 36918 0.71 0.999219
Target:  5'- gGGGAAGGGGACgCGGGCaGCGAc--- -3'
miRNA:   3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 37059 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 37346 0.66 0.999998
Target:  5'- cGggGGGAccGCCgGGACGACc----- -3'
miRNA:   3'- cCuuUCCUu-UGGgUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 37844 0.74 0.990701
Target:  5'- uGGggGGGAAGCggggaaaagaCAGugGGCAAGGGGg -3'
miRNA:   3'- -CCuuUCCUUUGg---------GUCugCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 38364 0.66 0.999999
Target:  5'- cGggGGGAAACUCGccguuuCGGCGAGGGGg -3'
miRNA:   3'- cCuuUCCUUUGGGUcu----GCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 38496 0.68 0.999976
Target:  5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3'
miRNA:   3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 39903 0.72 0.996928
Target:  5'- gGGucuAAGGGGACUgGG-CGACAAGAGAg -3'
miRNA:   3'- -CCu--UUCCUUUGGgUCuGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 39947 0.67 0.999991
Target:  5'- ----cGGAAACCCgAGA-GACGGAGAGg -3'
miRNA:   3'- ccuuuCCUUUGGG-UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40540 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40579 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40618 0.72 0.997861
Target:  5'- gGGGAGGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40658 0.72 0.997861
Target:  5'- gGGGAGGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40717 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40756 0.72 0.998544
Target:  5'- gGGGAGGGggGCgCGGGgGAgGGGAGGu -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.