miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 41492 0.66 0.999999
Target:  5'- cGGGuuGGuuguucguggcaccGGCCCAGACGACcGAGu- -3'
miRNA:   3'- -CCUuuCCu-------------UUGGGUCUGCUGuUUUuu -5'
21715 5' -44.3 NC_004812.1 + 42882 0.66 0.999999
Target:  5'- aGGAcgAAGGAGGCaaucucccgaaugUCAGACGGCGGc--- -3'
miRNA:   3'- -CCU--UUCCUUUG-------------GGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 44534 0.66 0.999999
Target:  5'- aGAGGGGugggcguGGCCCGGGCucGACGGAc-- -3'
miRNA:   3'- cCUUUCCu------UUGGGUCUG--CUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 45359 0.71 0.999219
Target:  5'- cGGGuugcGGGGAAACUCGGGCGugGu---- -3'
miRNA:   3'- -CCU----UUCCUUUGGGUCUGCugUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 45461 0.71 0.999374
Target:  5'- cGGggGGGcgagGAGCCCGaGCGGCAGc--- -3'
miRNA:   3'- -CCuuUCC----UUUGGGUcUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 45499 0.66 0.999999
Target:  5'- uGGGGAGGuugggcAGCCaCAGGCG-CGAGGGc -3'
miRNA:   3'- -CCUUUCCu-----UUGG-GUCUGCuGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 45678 0.66 0.999999
Target:  5'- ----uGGAAGCCCccccgGGACGGCAc---- -3'
miRNA:   3'- ccuuuCCUUUGGG-----UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 45776 0.69 0.999891
Target:  5'- gGGAAAguGGGuuUCCAGACaGGCGAGGAu -3'
miRNA:   3'- -CCUUU--CCUuuGGGUCUG-CUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 48271 0.67 0.999997
Target:  5'- cGGggGcgcuGGAGGCCCuggAGACGGCc----- -3'
miRNA:   3'- -CCuuU----CCUUUGGG---UCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 49617 0.71 0.999033
Target:  5'- uGGGAGGGgcGCCCgcgGGGCGGgAGGGGGa -3'
miRNA:   3'- -CCUUUCCuuUGGG---UCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 50524 0.69 0.999938
Target:  5'- cGGAcaGAGGAGGCgCAGgccGCGACAc---- -3'
miRNA:   3'- -CCU--UUCCUUUGgGUC---UGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 50646 0.71 0.999374
Target:  5'- uGGggGGcGggGCCCGG-CGACu----- -3'
miRNA:   3'- -CCuuUC-CuuUGGGUCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 52486 0.85 0.66364
Target:  5'- uGGAGAGGAAggaggacacGCCCgAGACGGCGGAGAc -3'
miRNA:   3'- -CCUUUCCUU---------UGGG-UCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 53625 0.66 0.999999
Target:  5'- uGGAGAGGG----CGGACGAgGAGAAGc -3'
miRNA:   3'- -CCUUUCCUuuggGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 54136 0.67 0.999991
Target:  5'- cGGAGGGGGGuggggugggcuCCCGG-CGGCGGGAc- -3'
miRNA:   3'- -CCUUUCCUUu----------GGGUCuGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 54694 0.66 0.999999
Target:  5'- aGGAGGGcGAGGgCCAGGaggggGACGAGGGGg -3'
miRNA:   3'- -CCUUUC-CUUUgGGUCUg----CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 55099 0.66 0.999999
Target:  5'- --uGGGGggGCCC-GACGACc----- -3'
miRNA:   3'- ccuUUCCuuUGGGuCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 57263 0.71 0.999374
Target:  5'- gGGggGGGggG---GGGCGACAAGGGAa -3'
miRNA:   3'- -CCuuUCCuuUgggUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 57352 0.69 0.999813
Target:  5'- gGGAGAGGAAGCagGGAaaGACGAGAc- -3'
miRNA:   3'- -CCUUUCCUUUGggUCUg-CUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 57416 0.68 0.999982
Target:  5'- uGGAccGGggG-CCGGGCGGCAc---- -3'
miRNA:   3'- -CCUuuCCuuUgGGUCUGCUGUuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.