miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 58319 0.73 0.996347
Target:  5'- ----cGGAGcCCCGGACGACGAGc-- -3'
miRNA:   3'- ccuuuCCUUuGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 60152 0.68 0.999982
Target:  5'- aGGAGGGG----CCAGGCGGCGAu--- -3'
miRNA:   3'- -CCUUUCCuuugGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 61524 0.83 0.729433
Target:  5'- cGGAAAGGAAGagccCCCGGACGGCGGc--- -3'
miRNA:   3'- -CCUUUCCUUU----GGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 62147 0.7 0.999501
Target:  5'- cGGcGAGGgcGCCCAGggaaACGAgGAAGAGc -3'
miRNA:   3'- -CCuUUCCuuUGGGUC----UGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 62787 0.72 0.998544
Target:  5'- gGGAAcAGGggGCCgCGGAUGAUggGc-- -3'
miRNA:   3'- -CCUU-UCCuuUGG-GUCUGCUGuuUuuu -5'
21715 5' -44.3 NC_004812.1 + 64078 0.66 0.999998
Target:  5'- aGGAgGAGGAcgAugCCGGG-GGCGAAGAGg -3'
miRNA:   3'- -CCU-UUCCU--UugGGUCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 64127 0.67 0.999996
Target:  5'- cGGggGGGAgGACgCGGACG-CGAu--- -3'
miRNA:   3'- -CCuuUCCU-UUGgGUCUGCuGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 66469 0.66 0.999998
Target:  5'- cGGAGAGcGAGCgCAcGACGGCGAu--- -3'
miRNA:   3'- -CCUUUCcUUUGgGU-CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 66701 0.66 0.999999
Target:  5'- aGGugcuGAGGGuguGCuCCAG-CGACAGGAGc -3'
miRNA:   3'- -CCu---UUCCUu--UG-GGUCuGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 67317 0.68 0.999976
Target:  5'- cGGGGAGGcGAGCgCGGGCGcucACAGAAc- -3'
miRNA:   3'- -CCUUUCC-UUUGgGUCUGC---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 67407 0.73 0.996347
Target:  5'- cGGAGccGGGGccccggcuCCCAGACGGCGGGGGu -3'
miRNA:   3'- -CCUU--UCCUuu------GGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 68342 0.69 0.999936
Target:  5'- aGAGccAGGAGGCCCgggucgaAGGCGACAu---- -3'
miRNA:   3'- cCUU--UCCUUUGGG-------UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 68449 0.68 0.999982
Target:  5'- cGAAGGGGcuCCCGGugGugGc---- -3'
miRNA:   3'- cCUUUCCUuuGGGUCugCugUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 76228 0.74 0.993061
Target:  5'- cGGAAGGGggGgC-GGGCGGCGGAAAc -3'
miRNA:   3'- -CCUUUCCuuUgGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 76463 0.67 0.999996
Target:  5'- aGGGcgacGAGGAAGgCCAGGgGGCAc---- -3'
miRNA:   3'- -CCU----UUCCUUUgGGUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 76530 0.72 0.998515
Target:  5'- cGGcGAGGAcgcccugGGCCCGGACGGCc----- -3'
miRNA:   3'- -CCuUUCCU-------UUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 76894 0.7 0.999605
Target:  5'- cGGAGGGugGCCaGGACGGCGGGGGc -3'
miRNA:   3'- cCUUUCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 78038 0.72 0.997429
Target:  5'- gGGggGGGugGCCCgcAGGCGGCGc---- -3'
miRNA:   3'- -CCuuUCCuuUGGG--UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 78675 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 78753 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.