miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 149541 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 149439 0.76 0.971549
Target:  5'- cGAGAGGGGAcacguCCCAGACGAgaaCAGAAGGg -3'
miRNA:   3'- cCUUUCCUUU-----GGGUCUGCU---GUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 149303 0.73 0.996347
Target:  5'- aGGAGAGGG---CCGGGCGACGGGc-- -3'
miRNA:   3'- -CCUUUCCUuugGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 148519 0.66 0.999999
Target:  5'- gGGAGGGGggGCggcgcgggccgCCGGgcGCGGCGGGGu- -3'
miRNA:   3'- -CCUUUCCuuUG-----------GGUC--UGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 147997 0.72 0.997861
Target:  5'- cGGgcGGcGggGCCgaGGGCGACGGAGAAu -3'
miRNA:   3'- -CCuuUC-CuuUGGg-UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 147807 0.68 0.999976
Target:  5'- cGAGAGu-AGCCCGGGCGGgAGGGGGa -3'
miRNA:   3'- cCUUUCcuUUGGGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 147256 0.7 0.999605
Target:  5'- --cGAGGAAACC--GGCGGCGAAGAGg -3'
miRNA:   3'- ccuUUCCUUUGGguCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 146659 0.7 0.999605
Target:  5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3'
miRNA:   3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 145288 0.68 0.999965
Target:  5'- cGGggGGGugugcgguguggcGGGCCCGGugGGCcGAu-- -3'
miRNA:   3'- -CCuuUCC-------------UUUGGGUCugCUGuUUuuu -5'
21715 5' -44.3 NC_004812.1 + 144623 0.71 0.999219
Target:  5'- cGGAGcccgccGGcGGAACCCcgcccccgcgGGACGACGAGGAGg -3'
miRNA:   3'- -CCUU------UC-CUUUGGG----------UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 143679 0.72 0.997861
Target:  5'- ----uGGggGCUCGGGCGACGGAc-- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 143666 0.67 0.999996
Target:  5'- cGGAAGaaucGGAGGCCCcGGCGAUc----- -3'
miRNA:   3'- -CCUUU----CCUUUGGGuCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 143508 0.71 0.999033
Target:  5'- cGGcGAGGcGGGCCCGGGCGuACGAGc-- -3'
miRNA:   3'- -CCuUUCC-UUUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 143279 0.72 0.998515
Target:  5'- cGGAAGGGAccgccgcacccccGACCCccGGcGCGGCGGAGAc -3'
miRNA:   3'- -CCUUUCCU-------------UUGGG--UC-UGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 142397 0.66 0.999999
Target:  5'- gGGAuaAAGGgcGCCCGGcccuggcGCGGCGAc--- -3'
miRNA:   3'- -CCU--UUCCuuUGGGUC-------UGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 142040 0.71 0.999033
Target:  5'- aGGAcGAGGAcgagcaGGcCCCGGGCGACGAGc-- -3'
miRNA:   3'- -CCU-UUCCU------UU-GGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 141470 0.68 0.999976
Target:  5'- ---cGGGGAGCCCccgAGGCGACGc---- -3'
miRNA:   3'- ccuuUCCUUUGGG---UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 141193 0.66 0.999998
Target:  5'- ----cGGAGGCCCGgGGCGGCGc---- -3'
miRNA:   3'- ccuuuCCUUUGGGU-CUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 139694 0.69 0.999891
Target:  5'- -aGGAGGggGCCgGaGACGGCGAGc-- -3'
miRNA:   3'- ccUUUCCuuUGGgU-CUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 139637 0.66 0.999998
Target:  5'- cGGggGGcGggGCCgAGAgaggGGCAGGGGAa -3'
miRNA:   3'- -CCuuUC-CuuUGGgUCUg---CUGUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.