miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 138529 0.68 0.999954
Target:  5'- ----cGGcgGCCCGGACGGCGGc--- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 138002 0.66 0.999999
Target:  5'- gGGggGGGGAGCggGGGCGccccguauACAAAAGGg -3'
miRNA:   3'- -CCuuUCCUUUGggUCUGC--------UGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 135841 0.68 0.999954
Target:  5'- uGGGAcucggcgucGGGggGCUCGGAgGGCAAc--- -3'
miRNA:   3'- -CCUU---------UCCuuUGGGUCUgCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 135709 0.67 0.999991
Target:  5'- gGGGAAGGGggUCC--ACGGCAGGu-- -3'
miRNA:   3'- -CCUUUCCUuuGGGucUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 135252 1.1 0.034668
Target:  5'- gGGAAAGGAAACCCAGACGACAAAAAAg -3'
miRNA:   3'- -CCUUUCCUUUGGGUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 131367 0.67 0.999996
Target:  5'- cGGGGAGGGuuCCCGGcccCGAgGAGGc- -3'
miRNA:   3'- -CCUUUCCUuuGGGUCu--GCUgUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 130783 0.69 0.999891
Target:  5'- cGAGGcGGcGACCCAGAaccaGGCGGAGAGc -3'
miRNA:   3'- cCUUU-CCuUUGGGUCUg---CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 130572 0.66 0.999998
Target:  5'- cGGGGcguccGGggGCCCcuGGACGugGAGc-- -3'
miRNA:   3'- -CCUUu----CCuuUGGG--UCUGCugUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 129649 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 128546 0.67 0.999991
Target:  5'- aGAGGcGGuuGCCCAGcGCGGCGAGc-- -3'
miRNA:   3'- cCUUU-CCuuUGGGUC-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 126940 0.67 0.999996
Target:  5'- cGGGGAGG-GGCCgGGGCcGCGAGGGc -3'
miRNA:   3'- -CCUUUCCuUUGGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 125422 0.66 0.999999
Target:  5'- ---cGGGAcGACCCugcGGACGACGGAc-- -3'
miRNA:   3'- ccuuUCCU-UUGGG---UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 125247 0.67 0.999987
Target:  5'- cGAucGAGGAGGCCCcGGcCGACGAc--- -3'
miRNA:   3'- cCU--UUCCUUUGGGuCU-GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 125174 0.69 0.999856
Target:  5'- gGGAGgcGGGAgGGCCCGGGCGcGCGGGc-- -3'
miRNA:   3'- -CCUU--UCCU-UUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 124645 0.71 0.999033
Target:  5'- cGGggGGcGAGAUCCuGGGCGACGu---- -3'
miRNA:   3'- -CCuuUC-CUUUGGG-UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 124624 0.68 0.999966
Target:  5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3'
miRNA:   3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 124488 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 124343 0.67 0.999997
Target:  5'- gGGggGGGAcgccgcgGACCgGGAgGACGu---- -3'
miRNA:   3'- -CCuuUCCU-------UUGGgUCUgCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 122418 0.67 0.999997
Target:  5'- cGGGu-GGAcgcgcggugGGCCCGGGCGGCGu---- -3'
miRNA:   3'- -CCUuuCCU---------UUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 122310 0.66 0.999999
Target:  5'- cGggGGGAGGC--GGGCGGCGAGu-- -3'
miRNA:   3'- cCuuUCCUUUGggUCUGCUGUUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.