miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 108625 0.7 0.999666
Target:  5'- cGAAGGGGuaguacggguccauGGCCCGuccGGCGGCAGGGAGg -3'
miRNA:   3'- cCUUUCCU--------------UUGGGU---CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 108547 0.69 0.999813
Target:  5'- cGggGGGAAACUCGGGgGugAuGAAGg -3'
miRNA:   3'- cCuuUCCUUUGGGUCUgCugUuUUUU- -5'
21715 5' -44.3 NC_004812.1 + 106929 0.73 0.994916
Target:  5'- cGGGAu-GAAGCCCAGGC-ACAGAAAGu -3'
miRNA:   3'- -CCUUucCUUUGGGUCUGcUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 106568 0.67 0.999991
Target:  5'- aGGGAGGAGgcGCCCGGGCcgGGCGcAGAc -3'
miRNA:   3'- cCUUUCCUU--UGGGUCUG--CUGUuUUUu -5'
21715 5' -44.3 NC_004812.1 + 105637 0.71 0.999033
Target:  5'- gGGAAGGGAGGCCgCGGAggcUGGCGu---- -3'
miRNA:   3'- -CCUUUCCUUUGG-GUCU---GCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 105430 0.67 0.999994
Target:  5'- gGGGAAGGAAcGCUCGGuGCG-CGGGGAGg -3'
miRNA:   3'- -CCUUUCCUU-UGGGUC-UGCuGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 105233 0.69 0.999813
Target:  5'- -cGAAGGAcACCCGGGCgGGCGAc--- -3'
miRNA:   3'- ccUUUCCUuUGGGUCUG-CUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 104312 0.67 0.999987
Target:  5'- cGGcgGGGAcggcGCCUccggGGGCGGCGAGGAGg -3'
miRNA:   3'- -CCuuUCCUu---UGGG----UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 103851 0.69 0.999918
Target:  5'- cGGGGuuggcGGGAAGCCCGGAaaACAGGu-- -3'
miRNA:   3'- -CCUU-----UCCUUUGGGUCUgcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 103417 0.68 0.999954
Target:  5'- cGGcccAGAGGAucuCCCuGACGAgAAAGAGg -3'
miRNA:   3'- -CC---UUUCCUuu-GGGuCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 102654 0.66 0.999999
Target:  5'- aGGAGGuGGAGGCCCGcucgguguacccGuACGACGAGu-- -3'
miRNA:   3'- -CCUUU-CCUUUGGGU------------C-UGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 102389 0.68 0.999966
Target:  5'- cGGAGGGGGGcacgacggaagcGCCCgcGGGCGGCGu---- -3'
miRNA:   3'- -CCUUUCCUU------------UGGG--UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 100128 0.72 0.998544
Target:  5'- gGGAGGGGAGgcguggcgGCgCGGGCGGCGGGGc- -3'
miRNA:   3'- -CCUUUCCUU--------UGgGUCUGCUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 98977 0.67 0.999994
Target:  5'- -----cGAGGCCCAGAUGACGu---- -3'
miRNA:   3'- ccuuucCUUUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 98896 0.7 0.999501
Target:  5'- cGGAAAGaGggGCgCGGuggcGCGGCAGAAGc -3'
miRNA:   3'- -CCUUUC-CuuUGgGUC----UGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 98837 0.69 0.999938
Target:  5'- aGAcGGGcgGCgCGGACGGCGGGGAGg -3'
miRNA:   3'- cCUuUCCuuUGgGUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 98516 0.68 0.999982
Target:  5'- cGGGucccGGGcgGCCCcGGCGACGAGc-- -3'
miRNA:   3'- -CCUu---UCCuuUGGGuCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 96863 0.71 0.99881
Target:  5'- gGGGAccccGGGAcccggccggAACCCAGACGACc----- -3'
miRNA:   3'- -CCUU----UCCU---------UUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 96345 0.69 0.999813
Target:  5'- cGGAAAGGcgGCCCAGGgGGg------ -3'
miRNA:   3'- -CCUUUCCuuUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 94017 0.72 0.997429
Target:  5'- aGGggGGGAAACgCGGcGCGAUggGGu- -3'
miRNA:   3'- -CCuuUCCUUUGgGUC-UGCUGuuUUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.