Results 41 - 60 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 155030 | 0.77 | 0.961215 |
Target: 5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3' miRNA: 3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 81586 | 0.77 | 0.953033 |
Target: 5'- cGAGGGGGucGGCUCGGGCGACGAGGu- -3' miRNA: 3'- cCUUUCCU--UUGGGUCUGCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 5345 | 0.79 | 0.8954 |
Target: 5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3' miRNA: 3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 6158 | 0.8 | 0.872687 |
Target: 5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3' miRNA: 3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 52486 | 0.85 | 0.66364 |
Target: 5'- uGGAGAGGAAggaggacacGCCCgAGACGGCGGAGAc -3' miRNA: 3'- -CCUUUCCUU---------UGGG-UCUGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 39903 | 0.72 | 0.996928 |
Target: 5'- gGGucuAAGGGGACUgGG-CGACAAGAGAg -3' miRNA: 3'- -CCu--UUCCUUUGGgUCuGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 85316 | 0.72 | 0.996928 |
Target: 5'- cGGAAgcccGGGcAGACCCAGGuCGGCGAu--- -3' miRNA: 3'- -CCUU----UCC-UUUGGGUCU-GCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 19762 | 0.71 | 0.999033 |
Target: 5'- cGGugcGGGGGuCCCAGGCGACGc---- -3' miRNA: 3'- -CCuu-UCCUUuGGGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 5054 | 0.71 | 0.999033 |
Target: 5'- cGGucacGGggGCCCGGGCGGgAGAc-- -3' miRNA: 3'- -CCuuu-CCuuUGGGUCUGCUgUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 96863 | 0.71 | 0.99881 |
Target: 5'- gGGGAccccGGGAcccggccggAACCCAGACGACc----- -3' miRNA: 3'- -CCUU----UCCU---------UUGGGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 82029 | 0.71 | 0.99881 |
Target: 5'- cGGggGGGAcGCCguCGGGCGcCGGAAAGc -3' miRNA: 3'- -CCuuUCCUuUGG--GUCUGCuGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 6017 | 0.71 | 0.99881 |
Target: 5'- gGGAAGGGGGACgCGGGCaGCGAc--- -3' miRNA: 3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 100128 | 0.72 | 0.998544 |
Target: 5'- gGGAGGGGAGgcguggcgGCgCGGGCGGCGGGGc- -3' miRNA: 3'- -CCUUUCCUU--------UGgGUCUGCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 76530 | 0.72 | 0.998515 |
Target: 5'- cGGcGAGGAcgcccugGGCCCGGACGGCc----- -3' miRNA: 3'- -CCuUUCCU-------UUGGGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143279 | 0.72 | 0.998515 |
Target: 5'- cGGAAGGGAccgccgcacccccGACCCccGGcGCGGCGGAGAc -3' miRNA: 3'- -CCUUUCCU-------------UUGGG--UC-UGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 147997 | 0.72 | 0.997861 |
Target: 5'- cGGgcGGcGggGCCgaGGGCGACGGAGAAu -3' miRNA: 3'- -CCuuUC-CuuUGGg-UCUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 91607 | 0.72 | 0.997861 |
Target: 5'- cGGAAauGGGGGACCCGGGgGGgGAGc-- -3' miRNA: 3'- -CCUU--UCCUUUGGGUCUgCUgUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 90912 | 0.72 | 0.997861 |
Target: 5'- cGGGguGAGGAu-CUCGGACGACGAGc-- -3' miRNA: 3'- -CCU--UUCCUuuGGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 94017 | 0.72 | 0.997429 |
Target: 5'- aGGggGGGAAACgCGGcGCGAUggGGu- -3' miRNA: 3'- -CCuuUCCUUUGgGUC-UGCUGuuUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 78038 | 0.72 | 0.997429 |
Target: 5'- gGGggGGGugGCCCgcAGGCGGCGc---- -3' miRNA: 3'- -CCuuUCCuuUGGG--UCUGCUGUuuuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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