miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 103851 0.69 0.999918
Target:  5'- cGGGGuuggcGGGAAGCCCGGAaaACAGGu-- -3'
miRNA:   3'- -CCUU-----UCCUUUGGGUCUgcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 23895 0.69 0.999918
Target:  5'- gGGAGucGGAcgucGGCCgGGACGACGAc--- -3'
miRNA:   3'- -CCUUu-CCU----UUGGgUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 68342 0.69 0.999936
Target:  5'- aGAGccAGGAGGCCCgggucgaAGGCGACAu---- -3'
miRNA:   3'- cCUU--UCCUUUGGG-------UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 2463 0.69 0.999938
Target:  5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3'
miRNA:   3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 92236 0.69 0.999938
Target:  5'- gGGAGAGGGuguGGCCUGGcGgGGCGGAGGAg -3'
miRNA:   3'- -CCUUUCCU---UUGGGUC-UgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 35573 0.7 0.99969
Target:  5'- aGGGAGGGGGcggcgggggcACCC-GACGGCGAc--- -3'
miRNA:   3'- -CCUUUCCUU----------UGGGuCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 146659 0.7 0.999605
Target:  5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3'
miRNA:   3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 142040 0.71 0.999033
Target:  5'- aGGAcGAGGAcgagcaGGcCCCGGGCGACGAGc-- -3'
miRNA:   3'- -CCU-UUCCU------UU-GGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 152514 0.71 0.999111
Target:  5'- cGGGGAGGAcGGCCCcgccggggccgcgggGGAgGACGAGGAc -3'
miRNA:   3'- -CCUUUCCU-UUGGG---------------UCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 144623 0.71 0.999219
Target:  5'- cGGAGcccgccGGcGGAACCCcgcccccgcgGGACGACGAGGAGg -3'
miRNA:   3'- -CCUU------UC-CUUUGGG----------UCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 45359 0.71 0.999219
Target:  5'- cGGGuugcGGGGAAACUCGGGCGugGu---- -3'
miRNA:   3'- -CCU----UUCCUUUGGGUCUGCugUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 9672 0.71 0.999359
Target:  5'- cGGAcccacgagcccgcGAGGAAACCCAGAgGAa------ -3'
miRNA:   3'- -CCU-------------UUCCUUUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 57263 0.71 0.999374
Target:  5'- gGGggGGGggG---GGGCGACAAGGGAa -3'
miRNA:   3'- -CCuuUCCuuUgggUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 45461 0.71 0.999374
Target:  5'- cGGggGGGcgagGAGCCCGaGCGGCAGc--- -3'
miRNA:   3'- -CCuuUCC----UUUGGGUcUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 50646 0.71 0.999374
Target:  5'- uGGggGGcGggGCCCGG-CGACu----- -3'
miRNA:   3'- -CCuuUC-CuuUGGGUCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 216 0.71 0.999374
Target:  5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3'
miRNA:   3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 89514 0.7 0.999501
Target:  5'- uGGAGAGcGAGCUgguguuugCGGGCGACGAGGAGg -3'
miRNA:   3'- -CCUUUCcUUUGG--------GUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156274 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 98896 0.7 0.999501
Target:  5'- cGGAAAGaGggGCgCGGuggcGCGGCAGAAGc -3'
miRNA:   3'- -CCUUUC-CuuUGgGUC----UGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 76894 0.7 0.999605
Target:  5'- cGGAGGGugGCCaGGACGGCGGGGGc -3'
miRNA:   3'- cCUUUCCuuUGGgUCUGCUGUUUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.