miRNA display CGI


Results 121 - 140 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 57263 0.71 0.999374
Target:  5'- gGGggGGGggG---GGGCGACAAGGGAa -3'
miRNA:   3'- -CCuuUCCuuUgggUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 45461 0.71 0.999374
Target:  5'- cGGggGGGcgagGAGCCCGaGCGGCAGc--- -3'
miRNA:   3'- -CCuuUCC----UUUGGGUcUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 50646 0.71 0.999374
Target:  5'- uGGggGGcGggGCCCGG-CGACu----- -3'
miRNA:   3'- -CCuuUC-CuuUGGGUCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 216 0.71 0.999374
Target:  5'- gGGAGGGGggGCCCAaGGCucccGCGGGGc- -3'
miRNA:   3'- -CCUUUCCuuUGGGU-CUGc---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 89514 0.7 0.999501
Target:  5'- uGGAGAGcGAGCUgguguuugCGGGCGACGAGGAGg -3'
miRNA:   3'- -CCUUUCcUUUGG--------GUCUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156274 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 105233 0.69 0.999813
Target:  5'- -cGAAGGAcACCCGGGCgGGCGAc--- -3'
miRNA:   3'- ccUUUCCUuUGGGUCUG-CUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 57352 0.69 0.999813
Target:  5'- gGGAGAGGAAGCagGGAaaGACGAGAc- -3'
miRNA:   3'- -CCUUUCCUUUGggUCUg-CUGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 35573 0.7 0.99969
Target:  5'- aGGGAGGGGGcggcgggggcACCC-GACGGCGAc--- -3'
miRNA:   3'- -CCUUUCCUU----------UGGGuCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 146659 0.7 0.999605
Target:  5'- gGGGAGGGGAGCguuggaCCGGA-GGCAAGAGc -3'
miRNA:   3'- -CCUUUCCUUUG------GGUCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 76894 0.7 0.999605
Target:  5'- cGGAGGGugGCCaGGACGGCGGGGGc -3'
miRNA:   3'- cCUUUCCuuUGGgUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 98896 0.7 0.999501
Target:  5'- cGGAAAGaGggGCgCGGuggcGCGGCAGAAGc -3'
miRNA:   3'- -CCUUUC-CuuUGgGUC----UGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 24256 0.75 0.982031
Target:  5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3'
miRNA:   3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 149439 0.76 0.971549
Target:  5'- cGAGAGGGGAcacguCCCAGACGAgaaCAGAAGGg -3'
miRNA:   3'- cCUUUCCUUU-----GGGUCUGCU---GUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 115622 0.77 0.961215
Target:  5'- gGGAAccagugGGGAAACCCGGAaaCGACAGu--- -3'
miRNA:   3'- -CCUU------UCCUUUGGGUCU--GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 29522 0.77 0.961215
Target:  5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3'
miRNA:   3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 36246 0.79 0.8954
Target:  5'- cGggGGGAGGCCCgggagAGGCGGCAGAc-- -3'
miRNA:   3'- cCuuUCCUUUGGG-----UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 37059 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 61524 0.83 0.729433
Target:  5'- cGGAAAGGAAGagccCCCGGACGGCGGc--- -3'
miRNA:   3'- -CCUUUCCUUU----GGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 115320 0.66 0.999999
Target:  5'- gGGAAAGGGAGuuUcguGGGCGGCGuuGGGg -3'
miRNA:   3'- -CCUUUCCUUUggG---UCUGCUGUuuUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.