miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 62147 0.7 0.999501
Target:  5'- cGGcGAGGgcGCCCAGggaaACGAgGAAGAGc -3'
miRNA:   3'- -CCuUUCCuuUGGGUC----UGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40717 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 37059 0.8 0.872687
Target:  5'- gGGGucGGggGCCUGGGCGGCGGGGGu -3'
miRNA:   3'- -CCUuuCCuuUGGGUCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 30766 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 61524 0.83 0.729433
Target:  5'- cGGAAAGGAAGagccCCCGGACGGCGGc--- -3'
miRNA:   3'- -CCUUUCCUUU----GGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 155525 0.68 0.999966
Target:  5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3'
miRNA:   3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 29522 0.77 0.961215
Target:  5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3'
miRNA:   3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 138529 0.68 0.999954
Target:  5'- ----cGGcgGCCCGGACGGCGGc--- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 149541 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 89717 0.69 0.999924
Target:  5'- cGGGGAGGAgcugcuccugcacaaAGCCCGGcuggcguGCGGCAAcGAGu -3'
miRNA:   3'- -CCUUUCCU---------------UUGGGUC-------UGCUGUUuUUU- -5'
21715 5' -44.3 NC_004812.1 + 30692 0.69 0.999891
Target:  5'- gGGGGAGGggGCCgCuggggagagGGACGGgGGGGAGa -3'
miRNA:   3'- -CCUUUCCuuUGG-G---------UCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 96345 0.69 0.999813
Target:  5'- cGGAAAGGcgGCCCAGGgGGg------ -3'
miRNA:   3'- -CCUUUCCuuUGGGUCUgCUguuuuuu -5'
21715 5' -44.3 NC_004812.1 + 108625 0.7 0.999666
Target:  5'- cGAAGGGGuaguacggguccauGGCCCGuccGGCGGCAGGGAGg -3'
miRNA:   3'- cCUUUCCU--------------UUGGGU---CUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 36918 0.71 0.999219
Target:  5'- gGGGAAGGGGACgCGGGCaGCGAc--- -3'
miRNA:   3'- -CCUUUCCUUUGgGUCUGcUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 124645 0.71 0.999033
Target:  5'- cGGggGGcGAGAUCCuGGGCGACGu---- -3'
miRNA:   3'- -CCuuUC-CUUUGGG-UCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 62787 0.72 0.998544
Target:  5'- gGGAAcAGGggGCCgCGGAUGAUggGc-- -3'
miRNA:   3'- -CCUU-UCCuuUGG-GUCUGCUGuuUuuu -5'
21715 5' -44.3 NC_004812.1 + 40658 0.72 0.997861
Target:  5'- gGGGAGGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 58319 0.73 0.996347
Target:  5'- ----cGGAGcCCCGGACGACGAGc-- -3'
miRNA:   3'- ccuuuCCUUuGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 16779 0.73 0.994047
Target:  5'- cGGAggguGAGGggGCCCAGGuggGGCGGGGGGa -3'
miRNA:   3'- -CCU----UUCCuuUGGGUCUg--CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 24256 0.75 0.982031
Target:  5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3'
miRNA:   3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.