Results 61 - 80 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 108625 | 0.7 | 0.999666 |
Target: 5'- cGAAGGGGuaguacggguccauGGCCCGuccGGCGGCAGGGAGg -3' miRNA: 3'- cCUUUCCU--------------UUGGGU---CUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 36186 | 0.69 | 0.999856 |
Target: 5'- cGggGGGAGGCCCGG--GAgGAGAAGc -3' miRNA: 3'- cCuuUCCUUUGGGUCugCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 115622 | 0.77 | 0.961215 |
Target: 5'- gGGAAccagugGGGAAACCCGGAaaCGACAGu--- -3' miRNA: 3'- -CCUU------UCCUUUGGGUCU--GCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 17817 | 0.74 | 0.989305 |
Target: 5'- aGAGGGGGuucgcggccacGACCCAGGCGGCcGGGAu -3' miRNA: 3'- cCUUUCCU-----------UUGGGUCUGCUGuUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 106929 | 0.73 | 0.994916 |
Target: 5'- cGGGAu-GAAGCCCAGGC-ACAGAAAGu -3' miRNA: 3'- -CCUUucCUUUGGGUCUGcUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 40540 | 0.72 | 0.997429 |
Target: 5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3' miRNA: 3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143679 | 0.72 | 0.997861 |
Target: 5'- ----uGGggGCUCGGGCGACGGAc-- -3' miRNA: 3'- ccuuuCCuuUGGGUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 4140 | 0.71 | 0.999033 |
Target: 5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3' miRNA: 3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 143508 | 0.71 | 0.999033 |
Target: 5'- cGGcGAGGcGGGCCCGGGCGuACGAGc-- -3' miRNA: 3'- -CCuUUCC-UUUGGGUCUGC-UGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 110644 | 0.71 | 0.999219 |
Target: 5'- cGGGgcGGAGACgCGGGCGGgGAGGGGu -3' miRNA: 3'- -CCUuuCCUUUGgGUCUGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 13259 | 0.67 | 0.999994 |
Target: 5'- ---cGGGAGGCCUccgacgucgGGGCGGCGGAGGc -3' miRNA: 3'- ccuuUCCUUUGGG---------UCUGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 17607 | 0.67 | 0.999991 |
Target: 5'- gGGcGAGGcGGGCCCGGGCGAa------ -3' miRNA: 3'- -CCuUUCC-UUUGGGUCUGCUguuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 45776 | 0.69 | 0.999891 |
Target: 5'- gGGAAAguGGGuuUCCAGACaGGCGAGGAu -3' miRNA: 3'- -CCUUU--CCUuuGGGUCUG-CUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 33364 | 0.69 | 0.999938 |
Target: 5'- cGGccGAGGAcGCCCucgaAGACGACGAc--- -3' miRNA: 3'- -CCu-UUCCUuUGGG----UCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 138529 | 0.68 | 0.999954 |
Target: 5'- ----cGGcgGCCCGGACGGCGGc--- -3' miRNA: 3'- ccuuuCCuuUGGGUCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 155525 | 0.68 | 0.999966 |
Target: 5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3' miRNA: 3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 38496 | 0.68 | 0.999976 |
Target: 5'- cGGGGAcGGAGGCCCGGggucggaggucGCGcCGGAGAc -3' miRNA: 3'- -CCUUU-CCUUUGGGUC-----------UGCuGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 68449 | 0.68 | 0.999982 |
Target: 5'- cGAAGGGGcuCCCGGugGugGc---- -3' miRNA: 3'- cCUUUCCUuuGGGUCugCugUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 30354 | 0.67 | 0.999987 |
Target: 5'- cGGGAGGcGAGGCgCGcGCGGCGGGGGAg -3' miRNA: 3'- -CCUUUC-CUUUGgGUcUGCUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 125247 | 0.67 | 0.999987 |
Target: 5'- cGAucGAGGAGGCCCcGGcCGACGAc--- -3' miRNA: 3'- cCU--UUCCUUUGGGuCU-GCUGUUuuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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