miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 20856 0.69 0.999935
Target:  5'- cGGAGGGGGGcucguggccccuCCCGGACGGCc----- -3'
miRNA:   3'- -CCUUUCCUUu-----------GGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 135841 0.68 0.999954
Target:  5'- uGGGAcucggcgucGGGggGCUCGGAgGGCAAc--- -3'
miRNA:   3'- -CCUU---------UCCuuUGGGUCUgCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 152216 0.68 0.999954
Target:  5'- cGgcGGGAccACCCGGGCGACGc---- -3'
miRNA:   3'- cCuuUCCUu-UGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 12288 0.68 0.999975
Target:  5'- cGGggGGGcggagcgAAACCCAcGACGGCc----- -3'
miRNA:   3'- -CCuuUCC-------UUUGGGU-CUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 67317 0.68 0.999976
Target:  5'- cGGGGAGGcGAGCgCGGGCGcucACAGAAc- -3'
miRNA:   3'- -CCUUUCC-UUUGgGUCUGC---UGUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 30354 0.67 0.999987
Target:  5'- cGGGAGGcGAGGCgCGcGCGGCGGGGGAg -3'
miRNA:   3'- -CCUUUC-CUUUGgGUcUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 125247 0.67 0.999987
Target:  5'- cGAucGAGGAGGCCCcGGcCGACGAc--- -3'
miRNA:   3'- cCU--UUCCUUUGGGuCU-GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 110644 0.71 0.999219
Target:  5'- cGGGgcGGAGACgCGGGCGGgGAGGGGu -3'
miRNA:   3'- -CCUuuCCUUUGgGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 143508 0.71 0.999033
Target:  5'- cGGcGAGGcGGGCCCGGGCGuACGAGc-- -3'
miRNA:   3'- -CCuUUCC-UUUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 4140 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 131367 0.67 0.999996
Target:  5'- cGGGGAGGGuuCCCGGcccCGAgGAGGc- -3'
miRNA:   3'- -CCUUUCCUuuGGGUCu--GCUgUUUUuu -5'
21715 5' -44.3 NC_004812.1 + 155389 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 91751 0.66 0.999998
Target:  5'- gGGGGAGGAAgagcGCCCgcgAGAUGugGGc--- -3'
miRNA:   3'- -CCUUUCCUU----UGGG---UCUGCugUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 108966 0.66 0.999998
Target:  5'- gGGAucGcGGGACCCGGugGGgAGGc-- -3'
miRNA:   3'- -CCUuuC-CUUUGGGUCugCUgUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 125422 0.66 0.999999
Target:  5'- ---cGGGAcGACCCugcGGACGACGGAc-- -3'
miRNA:   3'- ccuuUCCU-UUGGG---UCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 115622 0.77 0.961215
Target:  5'- gGGAAccagugGGGAAACCCGGAaaCGACAGu--- -3'
miRNA:   3'- -CCUU------UCCUUUGGGUCU--GCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 17817 0.74 0.989305
Target:  5'- aGAGGGGGuucgcggccacGACCCAGGCGGCcGGGAu -3'
miRNA:   3'- cCUUUCCU-----------UUGGGUCUGCUGuUUUUu -5'
21715 5' -44.3 NC_004812.1 + 106929 0.73 0.994916
Target:  5'- cGGGAu-GAAGCCCAGGC-ACAGAAAGu -3'
miRNA:   3'- -CCUUucCUUUGGGUCUGcUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40540 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 143679 0.72 0.997861
Target:  5'- ----uGGggGCUCGGGCGACGGAc-- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.