miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 38364 0.66 0.999999
Target:  5'- cGggGGGAAACUCGccguuuCGGCGAGGGGg -3'
miRNA:   3'- cCuuUCCUUUGGGUcu----GCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 106929 0.73 0.994916
Target:  5'- cGGGAu-GAAGCCCAGGC-ACAGAAAGu -3'
miRNA:   3'- -CCUUucCUUUGGGUCUGcUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 40540 0.72 0.997429
Target:  5'- aGGGGAGGggGCgCGGGgGAgGGGAGGg -3'
miRNA:   3'- -CCUUUCCuuUGgGUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 143679 0.72 0.997861
Target:  5'- ----uGGggGCUCGGGCGACGGAc-- -3'
miRNA:   3'- ccuuuCCuuUGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 4140 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 143508 0.71 0.999033
Target:  5'- cGGcGAGGcGGGCCCGGGCGuACGAGc-- -3'
miRNA:   3'- -CCuUUCC-UUUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 110644 0.71 0.999219
Target:  5'- cGGGgcGGAGACgCGGGCGGgGAGGGGu -3'
miRNA:   3'- -CCUuuCCUUUGgGUCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 10165 0.7 0.999758
Target:  5'- cGGggGGGggGCguUCGcGACGACGAc--- -3'
miRNA:   3'- -CCuuUCCuuUG--GGU-CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 108547 0.69 0.999813
Target:  5'- cGggGGGAAACUCGGGgGugAuGAAGg -3'
miRNA:   3'- cCuuUCCUUUGGGUCUgCugUuUUUU- -5'
21715 5' -44.3 NC_004812.1 + 130783 0.69 0.999891
Target:  5'- cGAGGcGGcGACCCAGAaccaGGCGGAGAGc -3'
miRNA:   3'- cCUUU-CCuUUGGGUCUg---CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 11363 0.66 0.999998
Target:  5'- gGGAGGGGGGcgguACCgGGGCGGgGAu--- -3'
miRNA:   3'- -CCUUUCCUU----UGGgUCUGCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 54694 0.66 0.999999
Target:  5'- aGGAGGGcGAGGgCCAGGaggggGACGAGGGGg -3'
miRNA:   3'- -CCUUUC-CUUUgGGUCUg----CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 90599 0.66 0.999999
Target:  5'- uGGuGGAGG-AACCCGG-CGGCGAu--- -3'
miRNA:   3'- -CC-UUUCCuUUGGGUCuGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 118640 0.69 0.999938
Target:  5'- gGGAGAGGgcGCCUGGAgCGGCc----- -3'
miRNA:   3'- -CCUUUCCuuUGGGUCU-GCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 18388 0.68 0.999954
Target:  5'- cGGAGGGGAAACCCcucgAGcCGAUc----- -3'
miRNA:   3'- -CCUUUCCUUUGGG----UCuGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 78675 0.68 0.999954
Target:  5'- gGGGucGGGggUUCGGACGACGc---- -3'
miRNA:   3'- -CCUuuCCUuuGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 39903 0.72 0.996928
Target:  5'- gGGucuAAGGGGACUgGG-CGACAAGAGAg -3'
miRNA:   3'- -CCu--UUCCUUUGGgUCuGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 103417 0.68 0.999954
Target:  5'- cGGcccAGAGGAucuCCCuGACGAgAAAGAGg -3'
miRNA:   3'- -CC---UUUCCUuu-GGGuCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 129649 0.71 0.999033
Target:  5'- cGGAGAGGGcGGCcgCCAGGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCU-UUG--GGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 105637 0.71 0.999033
Target:  5'- gGGAAGGGAGGCCgCGGAggcUGGCGu---- -3'
miRNA:   3'- -CCUUUCCUUUGG-GUCU---GCUGUuuuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.