Results 21 - 40 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21715 | 5' | -44.3 | NC_004812.1 | + | 36633 | 0.66 | 0.999999 |
Target: 5'- cGGGAGGAGggcgccgggcgccGCCCAGGCccACAGGGAc -3' miRNA: 3'- cCUUUCCUU-------------UGGGUCUGc-UGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 138002 | 0.66 | 0.999999 |
Target: 5'- gGGggGGGGAGCggGGGCGccccguauACAAAAGGg -3' miRNA: 3'- -CCuuUCCUUUGggUCUGC--------UGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 53625 | 0.66 | 0.999999 |
Target: 5'- uGGAGAGGG----CGGACGAgGAGAAGc -3' miRNA: 3'- -CCUUUCCUuuggGUCUGCUgUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 66701 | 0.66 | 0.999999 |
Target: 5'- aGGugcuGAGGGuguGCuCCAG-CGACAGGAGc -3' miRNA: 3'- -CCu---UUCCUu--UG-GGUCuGCUGUUUUUu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 155569 | 0.66 | 0.999999 |
Target: 5'- gGGGGAGGGGcgcGCgCGGGCGGCc----- -3' miRNA: 3'- -CCUUUCCUU---UGgGUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 122310 | 0.66 | 0.999999 |
Target: 5'- cGggGGGAGGC--GGGCGGCGAGu-- -3' miRNA: 3'- cCuuUCCUUUGggUCUGCUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 115540 | 0.66 | 0.999999 |
Target: 5'- cGGAGGGGggGCCUcgAGA-GACu----- -3' miRNA: 3'- -CCUUUCCuuUGGG--UCUgCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 44534 | 0.66 | 0.999999 |
Target: 5'- aGAGGGGugggcguGGCCCGGGCucGACGGAc-- -3' miRNA: 3'- cCUUUCCu------UUGGGUCUG--CUGUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 41492 | 0.66 | 0.999999 |
Target: 5'- cGGGuuGGuuguucguggcaccGGCCCAGACGACcGAGu- -3' miRNA: 3'- -CCUuuCCu-------------UUGGGUCUGCUGuUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 88720 | 0.66 | 0.999999 |
Target: 5'- gGGAGAGGcuGCgCCAGAgcaUGAUGAAGc- -3' miRNA: 3'- -CCUUUCCuuUG-GGUCU---GCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 42882 | 0.66 | 0.999999 |
Target: 5'- aGGAcgAAGGAGGCaaucucccgaaugUCAGACGGCGGc--- -3' miRNA: 3'- -CCU--UUCCUUUG-------------GGUCUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 148519 | 0.66 | 0.999999 |
Target: 5'- gGGAGGGGggGCggcgcgggccgCCGGgcGCGGCGGGGu- -3' miRNA: 3'- -CCUUUCCuuUG-----------GGUC--UGCUGUUUUuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 35760 | 0.66 | 0.999999 |
Target: 5'- gGGGAGGGGccgcGGCCCGcGCGAgAAAc-- -3' miRNA: 3'- -CCUUUCCU----UUGGGUcUGCUgUUUuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 45678 | 0.66 | 0.999999 |
Target: 5'- ----uGGAAGCCCccccgGGACGGCAc---- -3' miRNA: 3'- ccuuuCCUUUGGG-----UCUGCUGUuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 139637 | 0.66 | 0.999998 |
Target: 5'- cGGggGGcGggGCCgAGAgaggGGCAGGGGAa -3' miRNA: 3'- -CCuuUC-CuuUGGgUCUg---CUGUUUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 32678 | 0.66 | 0.999998 |
Target: 5'- cGGGAGGAGGCCgGGcCGGCccGGGAc -3' miRNA: 3'- cCUUUCCUUUGGgUCuGCUGuuUUUU- -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 6445 | 0.66 | 0.999998 |
Target: 5'- cGggGGGAccGCCgGGACGACc----- -3' miRNA: 3'- cCuuUCCUu-UGGgUCUGCUGuuuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 91751 | 0.66 | 0.999998 |
Target: 5'- gGGGGAGGAAgagcGCCCgcgAGAUGugGGc--- -3' miRNA: 3'- -CCUUUCCUU----UGGG---UCUGCugUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 66469 | 0.66 | 0.999998 |
Target: 5'- cGGAGAGcGAGCgCAcGACGGCGAu--- -3' miRNA: 3'- -CCUUUCcUUUGgGU-CUGCUGUUuuuu -5' |
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21715 | 5' | -44.3 | NC_004812.1 | + | 64078 | 0.66 | 0.999998 |
Target: 5'- aGGAgGAGGAcgAugCCGGG-GGCGAAGAGg -3' miRNA: 3'- -CCU-UUCCU--UugGGUCUgCUGUUUUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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