miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 3' -58.5 NC_004812.1 + 147874 0.66 0.815012
Target:  5'- -gGUCGGGGCCG-UCGagGCGUUCGGGg -3'
miRNA:   3'- ugCAGUCCUGGCgAGCg-CGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 71943 0.66 0.815012
Target:  5'- gACGgcgCGGGgcggcccuGCCGCgaCGCGCGCcgCGGGa -3'
miRNA:   3'- -UGCa--GUCC--------UGGCGa-GCGCGUGa-GCUC- -5'
21716 3' -58.5 NC_004812.1 + 25905 0.66 0.815012
Target:  5'- cGCGccCAGcGCCGCggGCGCGCgucgCGAGa -3'
miRNA:   3'- -UGCa-GUCcUGGCGagCGCGUGa---GCUC- -5'
21716 3' -58.5 NC_004812.1 + 127806 0.66 0.814163
Target:  5'- gGCGUCGGGGuCCgGCUCgagcaggGCGCGCgCGcAGa -3'
miRNA:   3'- -UGCAGUCCU-GG-CGAG-------CGCGUGaGC-UC- -5'
21716 3' -58.5 NC_004812.1 + 2298 0.66 0.814163
Target:  5'- gGCGUCGGGGuCCgGCUCgagcaggGCGCGCgCGcAGa -3'
miRNA:   3'- -UGCAGUCCU-GG-CGAG-------CGCGUGaGC-UC- -5'
21716 3' -58.5 NC_004812.1 + 48255 0.66 0.806451
Target:  5'- aGCG-CGGcGACguCGUcCGCGCGCUCGAa -3'
miRNA:   3'- -UGCaGUC-CUG--GCGaGCGCGUGAGCUc -5'
21716 3' -58.5 NC_004812.1 + 35130 0.66 0.806451
Target:  5'- aGCGUCAGGuCCagggaCUCcagGCGCACguccgUCGAGg -3'
miRNA:   3'- -UGCAGUCCuGGc----GAG---CGCGUG-----AGCUC- -5'
21716 3' -58.5 NC_004812.1 + 76255 0.66 0.806451
Target:  5'- gGCGgcCAGGcCCGCgCGCGCcgcCUCGAc -3'
miRNA:   3'- -UGCa-GUCCuGGCGaGCGCGu--GAGCUc -5'
21716 3' -58.5 NC_004812.1 + 94532 0.66 0.806451
Target:  5'- gACcUCGGGGCCGC-CGCcCugUCGGc -3'
miRNA:   3'- -UGcAGUCCUGGCGaGCGcGugAGCUc -5'
21716 3' -58.5 NC_004812.1 + 117627 0.67 0.79774
Target:  5'- gGCGgCGcGGGCCGC-CGgGCGCggCGGGg -3'
miRNA:   3'- -UGCaGU-CCUGGCGaGCgCGUGa-GCUC- -5'
21716 3' -58.5 NC_004812.1 + 82281 0.67 0.79774
Target:  5'- uCGUCGa---CGUUCGgGCGCUCGAGg -3'
miRNA:   3'- uGCAGUccugGCGAGCgCGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 148528 0.67 0.79774
Target:  5'- gGCGgCGcGGGCCGC-CGgGCGCggCGGGg -3'
miRNA:   3'- -UGCaGU-CCUGGCGaGCgCGUGa-GCUC- -5'
21716 3' -58.5 NC_004812.1 + 119912 0.67 0.788885
Target:  5'- uGCGcCAGGACCGCuUCGUG-ACg-GAGa -3'
miRNA:   3'- -UGCaGUCCUGGCG-AGCGCgUGagCUC- -5'
21716 3' -58.5 NC_004812.1 + 107676 0.67 0.788885
Target:  5'- cGCGUCGGcGCCaaGCUgGUggcgggccagGCGCUCGAGg -3'
miRNA:   3'- -UGCAGUCcUGG--CGAgCG----------CGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 54747 0.67 0.788885
Target:  5'- gGCG-CGGGGCCGCaucccCGCgGCGCgCGGGc -3'
miRNA:   3'- -UGCaGUCCUGGCGa----GCG-CGUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 81399 0.67 0.786203
Target:  5'- cGCGUCAcGGCCGCccugcgggaggcgcUCGCGgCACaCGAGc -3'
miRNA:   3'- -UGCAGUcCUGGCG--------------AGCGC-GUGaGCUC- -5'
21716 3' -58.5 NC_004812.1 + 36727 0.67 0.779897
Target:  5'- gGCGggcUCugcGGGCCgGCg-GCGCGCUCGGGa -3'
miRNA:   3'- -UGC---AGu--CCUGG-CGagCGCGUGAGCUC- -5'
21716 3' -58.5 NC_004812.1 + 87144 0.67 0.779897
Target:  5'- cGCGcCAGGGCgUGCUCGgcCGCGCgacaGAGg -3'
miRNA:   3'- -UGCaGUCCUG-GCGAGC--GCGUGag--CUC- -5'
21716 3' -58.5 NC_004812.1 + 15378 0.67 0.779897
Target:  5'- -aGUCAgGGACCGCUCcaccggcaCGUACUCGc- -3'
miRNA:   3'- ugCAGU-CCUGGCGAGc-------GCGUGAGCuc -5'
21716 3' -58.5 NC_004812.1 + 5826 0.67 0.779897
Target:  5'- gGCGggcUCugcGGGCCgGCg-GCGCGCUCGGGa -3'
miRNA:   3'- -UGC---AGu--CCUGG-CGagCGCGUGAGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.