miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 107946 0.66 0.977523
Target:  5'- aGGCCGGccAucGCGCGGCGaGGCgCGGGa -3'
miRNA:   3'- -CUGGCU--UuuUGUGCCGCcCUGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 48328 0.66 0.977523
Target:  5'- cGGCCGAGGccGCaACGGCGgcGGACgccgCCGAGg -3'
miRNA:   3'- -CUGGCUUUu-UG-UGCCGC--CCUG----GGUUC- -5'
21716 5' -53.2 NC_004812.1 + 102882 0.66 0.977523
Target:  5'- cACCGu-GGGCugGGacuGGGcGCCCAAGc -3'
miRNA:   3'- cUGGCuuUUUGugCCg--CCC-UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 81784 0.66 0.977281
Target:  5'- aGGCCGAGugggacgagguguGGGCGCGGUucggGcGGGCCCGc- -3'
miRNA:   3'- -CUGGCUU-------------UUUGUGCCG----C-CCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 53426 0.66 0.976792
Target:  5'- cACCGAGGAGCccggggccgcgcugACGGCGGccCCCGc- -3'
miRNA:   3'- cUGGCUUUUUG--------------UGCCGCCcuGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 140997 0.66 0.97502
Target:  5'- aGCCGggGGcCAC-GCaGGGGCCCcGGa -3'
miRNA:   3'- cUGGCuuUUuGUGcCG-CCCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 26722 0.66 0.97502
Target:  5'- aGGCgCGuc--GCACGGCGGG-CCguGGg -3'
miRNA:   3'- -CUG-GCuuuuUGUGCCGCCCuGGguUC- -5'
21716 5' -53.2 NC_004812.1 + 127294 0.66 0.97502
Target:  5'- cGCCGAcgGGAGCGCGuGCaucGGGCCCcGGc -3'
miRNA:   3'- cUGGCU--UUUUGUGC-CGc--CCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 85131 0.66 0.97502
Target:  5'- uACCGggGcGCGCgGGCGGGggcgcGCCUGGa -3'
miRNA:   3'- cUGGCuuUuUGUG-CCGCCC-----UGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 122081 0.66 0.97502
Target:  5'- gGGCUGGGccuGAGCGCcggGGCGGG-CCUggGu -3'
miRNA:   3'- -CUGGCUU---UUUGUG---CCGCCCuGGGuuC- -5'
21716 5' -53.2 NC_004812.1 + 152982 0.66 0.97502
Target:  5'- gGGCUGGGccuGAGCGCcggGGCGGG-CCUggGu -3'
miRNA:   3'- -CUGGCUU---UUUGUG---CCGCCCuGGGuuC- -5'
21716 5' -53.2 NC_004812.1 + 119015 0.66 0.97502
Target:  5'- uGCCGGGuGAACGCgGGCGGccaccGGCCCGu- -3'
miRNA:   3'- cUGGCUU-UUUGUG-CCGCC-----CUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 55301 0.66 0.97502
Target:  5'- cGCCGAGguGGGCuCGGCGcGGgccgacGCCCGGGc -3'
miRNA:   3'- cUGGCUU--UUUGuGCCGC-CC------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 49989 0.66 0.97502
Target:  5'- -uCCGguGAGCugGcGCuGGACCCGGa -3'
miRNA:   3'- cuGGCuuUUUGugC-CGcCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 1786 0.66 0.97502
Target:  5'- cGCCGAcgGGAGCGCGuGCaucGGGCCCcGGc -3'
miRNA:   3'- cUGGCU--UUUUGUGC-CGc--CCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 36839 0.66 0.97502
Target:  5'- aGGCCcccGGGCACagggGGCaGGGCCCGGGg -3'
miRNA:   3'- -CUGGcuuUUUGUG----CCGcCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5938 0.66 0.97502
Target:  5'- aGGCCcccGGGCACagggGGCaGGGCCCGGGg -3'
miRNA:   3'- -CUGGcuuUUUGUG----CCGcCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 112733 0.66 0.974759
Target:  5'- cGGCCGGgcgcGAAccGCGCGGCGGcGccgccgcGCCCGGa -3'
miRNA:   3'- -CUGGCU----UUU--UGUGCCGCC-C-------UGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 93457 0.66 0.973424
Target:  5'- -cCCGAGGAGgcCGCGGCggcucccccucccccGGGGgCCGAGg -3'
miRNA:   3'- cuGGCUUUUU--GUGCCG---------------CCCUgGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 86793 0.66 0.97232
Target:  5'- cGACCGGggggagaggaGGAGgGCGGCGGcGACgCGGu -3'
miRNA:   3'- -CUGGCU----------UUUUgUGCCGCC-CUGgGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.