miRNA display CGI

Results 21 - 40 of 981 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21717	3'	-61.6	NC_004812.1	+	73412	0.66	0.744625
	Target:  5'- gCCG-GCCuCACGACGCCCGcGuacagcACGAu- -3' miRNA:   3'- -GGCgCGG-GUGCUGCGGGCcC------UGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	24105	0.66	0.744625
	Target:  5'- gCCGCGgCgauguucgUGCGACGCgaUgGGGGCGggGg -3' miRNA:   3'- -GGCGCgG--------GUGCUGCG--GgCCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	145109	0.66	0.744625
	Target:  5'- cCUGCaGCUgCGCGACGCgUCGGaGGCGAGc -3' miRNA:   3'- -GGCG-CGG-GUGCUGCG-GGCC-CUGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	95519	0.66	0.744625
	Target:  5'- gCCGCcucgaCCC-CGGCggggcgGCCCGGGGCGucGc -3' miRNA:   3'- -GGCGc----GGGuGCUG------CGGGCCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	128136	0.66	0.744625
	Target:  5'- gCCGCgGCCCaggcgcggcgGCGGCGCguCCGGGuaGAGGc -3' miRNA:   3'- -GGCG-CGGG----------UGCUGCG--GGCCCugCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	2628	0.66	0.744625
	Target:  5'- gCCGCgGCCCaggcgcggcgGCGGCGCguCCGGGuaGAGGc -3' miRNA:   3'- -GGCG-CGGG----------UGCUGCG--GGCCCugCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	127590	0.66	0.744625
	Target:  5'- cCCGCGUCUACcaguccucggGGCgGCCCGGGcCGc-- -3' miRNA:   3'- -GGCGCGGGUG----------CUG-CGGGCCCuGCuuc -5'
21717	3'	-61.6	NC_004812.1	+	74789	0.66	0.744625
	Target:  5'- uCgGCGCCC-UGAUcacgcuccuggaGCCCGGGGcCGAc- -3' miRNA:   3'- -GgCGCGGGuGCUG------------CGGGCCCU-GCUuc -5'
21717	3'	-61.6	NC_004812.1	+	139584	0.66	0.744625
	Target:  5'- gCGCGUCguCGGggcagcCGUCCaGGACGAAGu -3' miRNA:   3'- gGCGCGGguGCU------GCGGGcCCUGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	139010	0.66	0.74371
	Target:  5'- cCCGgGCCCGCcuCGCCCgcagucugcugucGGugacGACGGAGg -3' miRNA:   3'- -GGCgCGGGUGcuGCGGG-------------CC----CUGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	25044	0.66	0.740959
	Target:  5'- cCCGCGCCUGCGcggugucgauagcCGCgCGGcGGCGGGc -3' miRNA:   3'- -GGCGCGGGUGCu------------GCGgGCC-CUGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	150553	0.66	0.740959
	Target:  5'- cCCGCGCCUGCGcggugucgauagcCGCgCGGcGGCGGGc -3' miRNA:   3'- -GGCGCGGGUGCu------------GCGgGCC-CUGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	105604	0.66	0.73912
	Target:  5'- aCaCGCCC-CGaugcaaagcguuuucGCGCCCGGGG-GAAGg -3' miRNA:   3'- gGcGCGGGuGC---------------UGCGGGCCCUgCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	20078	0.66	0.735434
	Target:  5'- gCGCGCCagccaGCgGACGCCUcGGAgGAGc -3' miRNA:   3'- gGCGCGGg----UG-CUGCGGGcCCUgCUUc -5'
21717	3'	-61.6	NC_004812.1	+	14706	0.66	0.735434
	Target:  5'- -aGaCGgCCACGAUGCgcugguucuCCGGGAUGAAc -3' miRNA:   3'- ggC-GCgGGUGCUGCG---------GGCCCUGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	142936	0.66	0.735434
	Target:  5'- -gGUGCCCgagagcuucaucACGAacccggccaaccUGCCCGGGugGAc- -3' miRNA:   3'- ggCGCGGG------------UGCU------------GCGGGCCCugCUuc -5'
21717	3'	-61.6	NC_004812.1	+	65482	0.66	0.735434
	Target:  5'- cCCGgGCCgaGCGcGCGCggaccaCgGGGGCGAGGg -3' miRNA:   3'- -GGCgCGGg-UGC-UGCG------GgCCCUGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	10985	0.66	0.735434
	Target:  5'- gCCGUGCUgGCG-CGCCCcGG-CGGAc -3' miRNA:   3'- -GGCGCGGgUGCuGCGGGcCCuGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	62103	0.66	0.735434
	Target:  5'- aCGCGCgCAUGGgguUGCUCGGGcGCGgcGg -3' miRNA:   3'- gGCGCGgGUGCU---GCGGGCCC-UGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	46279	0.66	0.735434
	Target:  5'- cCCGCGCaucgucagcgagCCggagACGACGUaCGGGGCGGGc -3' miRNA:   3'- -GGCGCG------------GG----UGCUGCGgGCCCUGCUUc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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