miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 5' -55.4 NC_004812.1 + 129011 0.67 0.875033
Target:  5'- uUCgg-CGGGUCCGGGGGCUaC-GGCg -3'
miRNA:   3'- gAGacaGUCUAGGUCCUCGAcGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 78269 0.67 0.875033
Target:  5'- gCUCaccGUUAGGUCCAGGAgGCccgagGCcgGGCc -3'
miRNA:   3'- -GAGa--CAGUCUAGGUCCU-CGa----CGa-CCG- -5'
21717 5' -55.4 NC_004812.1 + 123510 0.67 0.867612
Target:  5'- gUCUgggGUCGGGcgCCGGGAGC-GC-GGCg -3'
miRNA:   3'- gAGA---CAGUCUa-GGUCCUCGaCGaCCG- -5'
21717 5' -55.4 NC_004812.1 + 84215 0.67 0.867612
Target:  5'- gCUCacgUGGAUCCGcggccuGGAGgaGCUGGCg -3'
miRNA:   3'- -GAGacaGUCUAGGU------CCUCgaCGACCG- -5'
21717 5' -55.4 NC_004812.1 + 23120 0.67 0.866102
Target:  5'- gUCUGguugcugCAGAUCaccguccuGCUGCUGGCg -3'
miRNA:   3'- gAGACa------GUCUAGguccu---CGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 4515 0.68 0.844075
Target:  5'- -gCUGUUcGA-CCAGGGcgcGCUGCUGGg -3'
miRNA:   3'- gaGACAGuCUaGGUCCU---CGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 35416 0.68 0.844075
Target:  5'- -gCUGUUcGA-CCAGGGcgcGCUGCUGGg -3'
miRNA:   3'- gaGACAGuCUaGGUCCU---CGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 50844 0.68 0.827388
Target:  5'- -aCUGggCGG--UCAGGcGGCUGCUGGCu -3'
miRNA:   3'- gaGACa-GUCuaGGUCC-UCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 129733 0.68 0.818769
Target:  5'- ---cGUCGGG-CCGGGGGCgGCggcGGCg -3'
miRNA:   3'- gagaCAGUCUaGGUCCUCGaCGa--CCG- -5'
21717 5' -55.4 NC_004812.1 + 104780 0.68 0.809976
Target:  5'- ---cGggGGGUCCAGGGGCcguaggGCUGGUg -3'
miRNA:   3'- gagaCagUCUAGGUCCUCGa-----CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 53614 0.69 0.773243
Target:  5'- ---gGUCgAGcAUCgAGGGGCUGCUGGa -3'
miRNA:   3'- gagaCAG-UC-UAGgUCCUCGACGACCg -5'
21717 5' -55.4 NC_004812.1 + 37028 0.69 0.763715
Target:  5'- gCUCgaccGUCuGGUCCAGGuGCUgGgaGGCc -3'
miRNA:   3'- -GAGa---CAGuCUAGGUCCuCGA-CgaCCG- -5'
21717 5' -55.4 NC_004812.1 + 46423 0.69 0.763715
Target:  5'- ---gGcCAGGUCCAGGcGCUccccugggcGCUGGCg -3'
miRNA:   3'- gagaCaGUCUAGGUCCuCGA---------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 130338 0.69 0.763715
Target:  5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3'
miRNA:   3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5'
21717 5' -55.4 NC_004812.1 + 4830 0.69 0.763715
Target:  5'- cCUC-GUCGGcGUCCAGGGGCacgGCccgcGGCg -3'
miRNA:   3'- -GAGaCAGUC-UAGGUCCUCGa--CGa---CCG- -5'
21717 5' -55.4 NC_004812.1 + 60859 0.7 0.754067
Target:  5'- ---cGUCAGGUUCGGGGcGCgcgGCUGGg -3'
miRNA:   3'- gagaCAGUCUAGGUCCU-CGa--CGACCg -5'
21717 5' -55.4 NC_004812.1 + 123743 0.7 0.744309
Target:  5'- -cCUGUCuGGcgccUCCGGGGuGCcGCUGGCc -3'
miRNA:   3'- gaGACAGuCU----AGGUCCU-CGaCGACCG- -5'
21717 5' -55.4 NC_004812.1 + 78535 0.7 0.734451
Target:  5'- gCUCgGUCAGGcugCCgcaaGGGGGCUccggggGCUGGCg -3'
miRNA:   3'- -GAGaCAGUCUa--GG----UCCUCGA------CGACCG- -5'
21717 5' -55.4 NC_004812.1 + 79813 0.7 0.724503
Target:  5'- -cCUGcgCGccGAccUCUGGGGGCUGCUGGCc -3'
miRNA:   3'- gaGACa-GU--CU--AGGUCCUCGACGACCG- -5'
21717 5' -55.4 NC_004812.1 + 74181 0.7 0.714473
Target:  5'- -gCUGgucgcgaagggCAGGUCCAGGucGCUGgUGGCc -3'
miRNA:   3'- gaGACa----------GUCUAGGUCCu-CGACgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.