miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 87138 0.66 0.586903
Target:  5'- cGGCGGCGCgccagggcgUGCUCGGCcGC-GCg- -3'
miRNA:   3'- aCUGCCGCGa--------GCGGGCCGuCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 126972 0.66 0.586903
Target:  5'- cGGCGGCGacgccggcgucCUCGgCgGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-----------GAGCgGgCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 127997 0.66 0.586903
Target:  5'- cGGCGGCGgcCUCGCgggcgggcgagUCGGCGGCgcgGCc- -3'
miRNA:   3'- aCUGCCGC--GAGCG-----------GGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 122440 0.66 0.586903
Target:  5'- gGGCGGCGuCUCcUCgGGCGGCggggGCg- -3'
miRNA:   3'- aCUGCCGC-GAGcGGgCCGUCGa---CGac -5'
21718 3' -63.1 NC_004812.1 + 2489 0.66 0.586903
Target:  5'- cGGCGGCGgcCUCGCgggcgggcgagUCGGCGGCgcgGCc- -3'
miRNA:   3'- aCUGCCGC--GAGCG-----------GGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 56257 0.66 0.586903
Target:  5'- cGGgGGCGCgccccugcgccUCGCCCgcGGCGGCccGCUc -3'
miRNA:   3'- aCUgCCGCG-----------AGCGGG--CCGUCGa-CGAc -5'
21718 3' -63.1 NC_004812.1 + 1464 0.66 0.586903
Target:  5'- cGGCGGCGacgccggcgucCUCGgCgGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-----------GAGCgGgCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 137319 0.66 0.586903
Target:  5'- cUGACGGUGCaCGCCgGGCcgggGGCccUGCc- -3'
miRNA:   3'- -ACUGCCGCGaGCGGgCCG----UCG--ACGac -5'
21718 3' -63.1 NC_004812.1 + 109320 0.66 0.577144
Target:  5'- cGGCGGCGCUgGa--GGCGGCgccgcGCUa -3'
miRNA:   3'- aCUGCCGCGAgCgggCCGUCGa----CGAc -5'
21718 3' -63.1 NC_004812.1 + 62675 0.66 0.577144
Target:  5'- gGACGGCGCgUCGCCgugcacguguaCGGCAcGC-GCc- -3'
miRNA:   3'- aCUGCCGCG-AGCGG-----------GCCGU-CGaCGac -5'
21718 3' -63.1 NC_004812.1 + 75824 0.66 0.577144
Target:  5'- cGGCGGCag-CGCCgGGUGG-UGCUGg -3'
miRNA:   3'- aCUGCCGcgaGCGGgCCGUCgACGAC- -5'
21718 3' -63.1 NC_004812.1 + 4218 0.66 0.577144
Target:  5'- cGGCGGCGuCggGCUCGGgGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-GagCGGGCCgUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 56357 0.66 0.577144
Target:  5'- gUGGCGGacaucCGUUCGCaguuuCGGCGGCUcCUGa -3'
miRNA:   3'- -ACUGCC-----GCGAGCGg----GCCGUCGAcGAC- -5'
21718 3' -63.1 NC_004812.1 + 118844 0.66 0.577144
Target:  5'- gUGGaGGCGCUCGC---GCAGCUGgUGg -3'
miRNA:   3'- -ACUgCCGCGAGCGggcCGUCGACgAC- -5'
21718 3' -63.1 NC_004812.1 + 95102 0.66 0.577144
Target:  5'- cGAgGGCGgUcCGCCCcuuuggGGCGGCU-CUGg -3'
miRNA:   3'- aCUgCCGCgA-GCGGG------CCGUCGAcGAC- -5'
21718 3' -63.1 NC_004812.1 + 130955 0.66 0.577144
Target:  5'- gGGCGGacgaacgaGCcggcCGCCCGcGC-GCUGCUGu -3'
miRNA:   3'- aCUGCCg-------CGa---GCGGGC-CGuCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 100955 0.66 0.571306
Target:  5'- gUGGCGGgGCgcgccgcCGCggacguccgcgagcgCCGGCGGCUGUa- -3'
miRNA:   3'- -ACUGCCgCGa------GCG---------------GGCCGUCGACGac -5'
21718 3' -63.1 NC_004812.1 + 108455 0.66 0.567422
Target:  5'- -cGCGGcCGC-CGCCCGGC-GCcGCg- -3'
miRNA:   3'- acUGCC-GCGaGCGGGCCGuCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 88725 0.66 0.567422
Target:  5'- cGugGGCuccUUCGCCCGGUucgAGCUGa-- -3'
miRNA:   3'- aCugCCGc--GAGCGGGCCG---UCGACgac -5'
21718 3' -63.1 NC_004812.1 + 105409 0.66 0.567422
Target:  5'- gUGcCGGCGCUCggcgggGCCCGGC-GCccGCg- -3'
miRNA:   3'- -ACuGCCGCGAG------CGGGCCGuCGa-CGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.