miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 5' -55.4 NC_004812.1 + 150381 0.67 0.866155
Target:  5'- cGGCcGCGgggCCGCGGCGgcaGGGGCggCGUc -3'
miRNA:   3'- -CUGaUGUa--GGUGCCGC---UCCCGuaGUA- -5'
21718 5' -55.4 NC_004812.1 + 72211 0.67 0.859218
Target:  5'- cGCgggGCGUCCGCGGCcucgcggacugcggcGGGGCGUCc- -3'
miRNA:   3'- cUGa--UGUAGGUGCCGc--------------UCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 45697 0.67 0.858437
Target:  5'- uGCUACGaUCGCGGCGccGGGCGcUCAUc -3'
miRNA:   3'- cUGAUGUaGGUGCCGCu-CCCGU-AGUA- -5'
21718 5' -55.4 NC_004812.1 + 12841 0.67 0.850507
Target:  5'- uGGCUGC-UCCACGGUGuAGuGGCAg--- -3'
miRNA:   3'- -CUGAUGuAGGUGCCGC-UC-CCGUagua -5'
21718 5' -55.4 NC_004812.1 + 124459 0.67 0.850507
Target:  5'- gGGCgccCcgCCGCGGCGGGGGCc---- -3'
miRNA:   3'- -CUGau-GuaGGUGCCGCUCCCGuagua -5'
21718 5' -55.4 NC_004812.1 + 97425 0.68 0.842374
Target:  5'- --gUGgGUCgACGGCGAcGGCAUCAa -3'
miRNA:   3'- cugAUgUAGgUGCCGCUcCCGUAGUa -5'
21718 5' -55.4 NC_004812.1 + 73446 0.68 0.842374
Target:  5'- gGGCcGCGcgCCACGGCGccAGGGgGUCGg -3'
miRNA:   3'- -CUGaUGUa-GGUGCCGC--UCCCgUAGUa -5'
21718 5' -55.4 NC_004812.1 + 113004 0.68 0.842374
Target:  5'- -cCUGCc-CCGCGGCGuGGGCuAUCGg -3'
miRNA:   3'- cuGAUGuaGGUGCCGCuCCCG-UAGUa -5'
21718 5' -55.4 NC_004812.1 + 88224 0.68 0.825522
Target:  5'- gGACgGCggCUggGCGGCGGGGGCGUUu- -3'
miRNA:   3'- -CUGaUGuaGG--UGCCGCUCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 116152 0.68 0.81682
Target:  5'- gGGCcACAgggCCGCGGCGc-GGCAUCGg -3'
miRNA:   3'- -CUGaUGUa--GGUGCCGCucCCGUAGUa -5'
21718 5' -55.4 NC_004812.1 + 38608 0.68 0.798904
Target:  5'- cGCgccgaGUCCGCGGCGGGGGUcUCc- -3'
miRNA:   3'- cUGaug--UAGGUGCCGCUCCCGuAGua -5'
21718 5' -55.4 NC_004812.1 + 7707 0.68 0.798904
Target:  5'- cGCgccgaGUCCGCGGCGGGGGUcUCc- -3'
miRNA:   3'- cUGaug--UAGGUGCCGCUCCCGuAGua -5'
21718 5' -55.4 NC_004812.1 + 22102 0.69 0.780366
Target:  5'- uGGCggugGCGUCCAUGGCGAugauccggGGGCAcgCGc -3'
miRNA:   3'- -CUGa---UGUAGGUGCCGCU--------CCCGUa-GUa -5'
21718 5' -55.4 NC_004812.1 + 122440 0.69 0.770886
Target:  5'- gGGCgGCGUCUccucggGCGGCGGGGGCG-CGg -3'
miRNA:   3'- -CUGaUGUAGG------UGCCGCUCCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 153341 0.69 0.770886
Target:  5'- gGGCgGCGUCUccucggGCGGCGGGGGCG-CGg -3'
miRNA:   3'- -CUGaUGUAGG------UGCCGCUCCCGUaGUa -5'
21718 5' -55.4 NC_004812.1 + 115584 0.69 0.770886
Target:  5'- aGACgGCuUCCGCGGCGGGcGGCGg--- -3'
miRNA:   3'- -CUGaUGuAGGUGCCGCUC-CCGUagua -5'
21718 5' -55.4 NC_004812.1 + 125849 0.69 0.761279
Target:  5'- cGGCU-CGcCCGCGGCcccGGGCAUCGUg -3'
miRNA:   3'- -CUGAuGUaGGUGCCGcu-CCCGUAGUA- -5'
21718 5' -55.4 NC_004812.1 + 22762 0.69 0.761279
Target:  5'- gGACcuggUGCGUCCA-GGUGGGGGCGUUu- -3'
miRNA:   3'- -CUG----AUGUAGGUgCCGCUCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 94256 0.69 0.761279
Target:  5'- cGACgcGCAUCUcCGGCG-GGGCGUCc- -3'
miRNA:   3'- -CUGa-UGUAGGuGCCGCuCCCGUAGua -5'
21718 5' -55.4 NC_004812.1 + 70025 0.69 0.751553
Target:  5'- aACUuCAUCCGCggacaGGCGGGGGCGcUCGc -3'
miRNA:   3'- cUGAuGUAGGUG-----CCGCUCCCGU-AGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.