miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 5' -56.9 NC_004812.1 + 7269 0.67 0.834585
Target:  5'- aGACGgggagGGGGCGgCGGCCgcguGUGAg -3'
miRNA:   3'- cCUGUaua--CCUCGCgGCCGGac--CACU- -5'
21719 5' -56.9 NC_004812.1 + 100974 0.67 0.826288
Target:  5'- cGGACGUccGcGAGCGCCGGCggCUGu--- -3'
miRNA:   3'- -CCUGUAuaC-CUCGCGGCCG--GACcacu -5'
21719 5' -56.9 NC_004812.1 + 149017 0.67 0.826288
Target:  5'- cGGGCGc--GGcGGCGCCGGCUUuaugccggcGGUGGg -3'
miRNA:   3'- -CCUGUauaCC-UCGCGGCCGGA---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 96533 0.67 0.826288
Target:  5'- uGGCGc--GGGcCGCCGGCCUGGUc- -3'
miRNA:   3'- cCUGUauaCCUcGCGGCCGGACCAcu -5'
21719 5' -56.9 NC_004812.1 + 23509 0.67 0.826288
Target:  5'- cGGGCGc--GGcGGCGCCGGCUUuaugccggcGGUGGg -3'
miRNA:   3'- -CCUGUauaCC-UCGCGGCCGGA---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 81095 0.67 0.826288
Target:  5'- gGGGCccGUGGcGGUGCgggCGGCgUGGUGGg -3'
miRNA:   3'- -CCUGuaUACC-UCGCG---GCCGgACCACU- -5'
21719 5' -56.9 NC_004812.1 + 148182 0.67 0.817818
Target:  5'- cGGGCg---GGGGCGgCGGCCUccGGUa- -3'
miRNA:   3'- -CCUGuauaCCUCGCgGCCGGA--CCAcu -5'
21719 5' -56.9 NC_004812.1 + 59621 0.67 0.817818
Target:  5'- aGGGCGUggggGUGGGGCGggagCGGCCgcgggGGaUGAg -3'
miRNA:   3'- -CCUGUA----UACCUCGCg---GCCGGa----CC-ACU- -5'
21719 5' -56.9 NC_004812.1 + 117281 0.67 0.817818
Target:  5'- cGGGCg---GGGGCGgCGGCCUccGGUa- -3'
miRNA:   3'- -CCUGuauaCCUCGCgGCCGGA--CCAcu -5'
21719 5' -56.9 NC_004812.1 + 57757 0.68 0.809182
Target:  5'- uGGGCccggAUGGAGCGCagcgucaaGGCgUGGUucGAg -3'
miRNA:   3'- -CCUGua--UACCUCGCGg-------CCGgACCA--CU- -5'
21719 5' -56.9 NC_004812.1 + 138234 0.68 0.809182
Target:  5'- uGGACgAUGUGGGGCccGCgGGCCcggcgccgccGGUGGc -3'
miRNA:   3'- -CCUG-UAUACCUCG--CGgCCGGa---------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 153355 0.68 0.800388
Target:  5'- cGGGCGgcgGGGGCGCgGGCgcccCUGGcGGg -3'
miRNA:   3'- -CCUGUauaCCUCGCGgCCG----GACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 44166 0.68 0.800388
Target:  5'- aGGGCGcUcgGGGGCcgaGCCGGUCUgcggcgggGGUGGg -3'
miRNA:   3'- -CCUGU-AuaCCUCG---CGGCCGGA--------CCACU- -5'
21719 5' -56.9 NC_004812.1 + 122454 0.68 0.800388
Target:  5'- cGGGCGgcgGGGGCGCgGGCgcccCUGGcGGg -3'
miRNA:   3'- -CCUGUauaCCUCGCGgCCG----GACCaCU- -5'
21719 5' -56.9 NC_004812.1 + 44408 0.68 0.800388
Target:  5'- gGGGCGUGgauagcccGGGGCGCCGGgCgGGa-- -3'
miRNA:   3'- -CCUGUAUa-------CCUCGCGGCCgGaCCacu -5'
21719 5' -56.9 NC_004812.1 + 94121 0.68 0.791445
Target:  5'- cGGGCGcGUGGuccGCGCCGGCCcagaGGc-- -3'
miRNA:   3'- -CCUGUaUACCu--CGCGGCCGGa---CCacu -5'
21719 5' -56.9 NC_004812.1 + 86732 0.68 0.782361
Target:  5'- cGGGCAgGUGGAaccggggguccGCGUCGGCCaUGGc-- -3'
miRNA:   3'- -CCUGUaUACCU-----------CGCGGCCGG-ACCacu -5'
21719 5' -56.9 NC_004812.1 + 121750 0.68 0.782361
Target:  5'- cGGCGg--GGGGCGCCGGgCCUccGG-GAg -3'
miRNA:   3'- cCUGUauaCCUCGCGGCC-GGA--CCaCU- -5'
21719 5' -56.9 NC_004812.1 + 153040 0.68 0.763804
Target:  5'- aGGACGgccUGG-GCGCgGGCCUGaGUu- -3'
miRNA:   3'- -CCUGUau-ACCuCGCGgCCGGAC-CAcu -5'
21719 5' -56.9 NC_004812.1 + 42762 0.68 0.763804
Target:  5'- cGGGCGUGaccucuuuGGUGCUGGCCgugGGUGAc -3'
miRNA:   3'- -CCUGUAUacc-----UCGCGGCCGGa--CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.