miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 3' -54 NC_004812.1 + 3140 0.67 0.933385
Target:  5'- cGGCGCGUAGAgcaCCagcacGCGCA-CGUCCu -3'
miRNA:   3'- -CUGUGCGUCUa--GGa----CGCGUaGUAGGu -5'
21720 3' -54 NC_004812.1 + 114382 0.67 0.933385
Target:  5'- cGACGCGCGcGGUCCUccucGgGCGUCAgguagUCAa -3'
miRNA:   3'- -CUGUGCGU-CUAGGA----CgCGUAGUa----GGU- -5'
21720 3' -54 NC_004812.1 + 141298 0.67 0.928125
Target:  5'- -uCGCGCGG--CCUGCGCAUCAc--- -3'
miRNA:   3'- cuGUGCGUCuaGGACGCGUAGUaggu -5'
21720 3' -54 NC_004812.1 + 98317 0.67 0.924848
Target:  5'- cGGCGCGCGGGUgCUGgcuCGCguacgccgaccggccGUCGUCCu -3'
miRNA:   3'- -CUGUGCGUCUAgGAC---GCG---------------UAGUAGGu -5'
21720 3' -54 NC_004812.1 + 137205 0.67 0.922614
Target:  5'- cACGCGCAGG-CCgugaccGCGCG-CGUCCu -3'
miRNA:   3'- cUGUGCGUCUaGGa-----CGCGUaGUAGGu -5'
21720 3' -54 NC_004812.1 + 124647 0.67 0.922614
Target:  5'- gGGgGCG-AGAUCCUGgGCGaCGUCCu -3'
miRNA:   3'- -CUgUGCgUCUAGGACgCGUaGUAGGu -5'
21720 3' -54 NC_004812.1 + 89270 0.67 0.922614
Target:  5'- gGACGCGCAGG-CCgcgGCGCGgcgCGgagCCc -3'
miRNA:   3'- -CUGUGCGUCUaGGa--CGCGUa--GUa--GGu -5'
21720 3' -54 NC_004812.1 + 150585 0.67 0.922614
Target:  5'- cGGCGCGCAG-UCgCUGC-CcgCGUCCc -3'
miRNA:   3'- -CUGUGCGUCuAG-GACGcGuaGUAGGu -5'
21720 3' -54 NC_004812.1 + 4533 0.67 0.922614
Target:  5'- uGACGCGCGGGUUCUGCaGCcagc-CCAu -3'
miRNA:   3'- -CUGUGCGUCUAGGACG-CGuaguaGGU- -5'
21720 3' -54 NC_004812.1 + 106110 0.67 0.922614
Target:  5'- aGCGCGCGGGUgagcgCCUcgGCGCccggCGUCCAc -3'
miRNA:   3'- cUGUGCGUCUA-----GGA--CGCGua--GUAGGU- -5'
21720 3' -54 NC_004812.1 + 66813 0.67 0.922614
Target:  5'- -uCACGCGGAUggCCgggugGUGgAUCGUCCGg -3'
miRNA:   3'- cuGUGCGUCUA--GGa----CGCgUAGUAGGU- -5'
21720 3' -54 NC_004812.1 + 119684 0.67 0.922614
Target:  5'- cGGCGCGCAG-UCgCUGC-CcgCGUCCc -3'
miRNA:   3'- -CUGUGCGUCuAG-GACGcGuaGUAGGu -5'
21720 3' -54 NC_004812.1 + 130041 0.67 0.922614
Target:  5'- uGACGCGCGGGUUCUGCaGCcagc-CCAu -3'
miRNA:   3'- -CUGUGCGUCUAGGACG-CGuaguaGGU- -5'
21720 3' -54 NC_004812.1 + 107982 0.67 0.922614
Target:  5'- aGAgAgGCGGGgcguUCCcgcacGCGCGUCGUCCGg -3'
miRNA:   3'- -CUgUgCGUCU----AGGa----CGCGUAGUAGGU- -5'
21720 3' -54 NC_004812.1 + 91666 0.67 0.922614
Target:  5'- cACugGguGGUCgUGUGCGUCAgaauggCCu -3'
miRNA:   3'- cUGugCguCUAGgACGCGUAGUa-----GGu -5'
21720 3' -54 NC_004812.1 + 110342 0.67 0.916854
Target:  5'- -cCGCGCGGAUCCUGcCGCGcc--CCGa -3'
miRNA:   3'- cuGUGCGUCUAGGAC-GCGUaguaGGU- -5'
21720 3' -54 NC_004812.1 + 146060 0.67 0.910845
Target:  5'- cGGCACGCAGAac--GCGCGUgAUUCAc -3'
miRNA:   3'- -CUGUGCGUCUaggaCGCGUAgUAGGU- -5'
21720 3' -54 NC_004812.1 + 106073 0.67 0.91023
Target:  5'- uGGCGCGUGGGUgucgcggCCUGCGCcUCcucuGUCCGa -3'
miRNA:   3'- -CUGUGCGUCUA-------GGACGCGuAG----UAGGU- -5'
21720 3' -54 NC_004812.1 + 3829 0.67 0.904588
Target:  5'- cGACGCGgAGGUCCccGCGCAggcgCAUgagcaCCAg -3'
miRNA:   3'- -CUGUGCgUCUAGGa-CGCGUa---GUA-----GGU- -5'
21720 3' -54 NC_004812.1 + 129337 0.67 0.904588
Target:  5'- cGACGCGgAGGUCCccGCGCAggcgCAUgagcaCCAg -3'
miRNA:   3'- -CUGUGCgUCUAGGa-CGCGUa---GUA-----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.