miRNA display CGI


Results 21 - 40 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 136871 0.66 0.931645
Target:  5'- cGG-GCugGUGGcgcggauCGAGggucugCCCGaCGGCc -3'
miRNA:   3'- -CCaCGugCACCu------GCUCaa----GGGC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 110444 0.66 0.931645
Target:  5'- cGUGgACGcucgaccugcUGGcCGAGcgCCUGCGGCc -3'
miRNA:   3'- cCACgUGC----------ACCuGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 72041 0.66 0.931645
Target:  5'- aGGagGCG-GUGGAgGGGggggcugCCCGCGGUu -3'
miRNA:   3'- -CCa-CGUgCACCUgCUCaa-----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 98583 0.66 0.928575
Target:  5'- --aGCACGagGGGCGcGUccgucaggucgucgcUCCCGUGGCc -3'
miRNA:   3'- ccaCGUGCa-CCUGCuCA---------------AGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 62330 0.66 0.926481
Target:  5'- aGGcGCACGcccgGGccgcgGCGcGcgCCCGCGGCg -3'
miRNA:   3'- -CCaCGUGCa---CC-----UGCuCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 96719 0.66 0.926481
Target:  5'- cGGUGC-CG-GGccACGAGggCCgggcCGCGGCc -3'
miRNA:   3'- -CCACGuGCaCC--UGCUCaaGG----GCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 97564 0.66 0.926481
Target:  5'- cGGUGCuGCGccggcgcgugaUGGAccucuuuaacaaCGGGUUCCUGcCGGCc -3'
miRNA:   3'- -CCACG-UGC-----------ACCU------------GCUCAAGGGC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 31745 0.66 0.926481
Target:  5'- --gGCGCG-GGGCGGGgg--CGCGGCg -3'
miRNA:   3'- ccaCGUGCaCCUGCUCaaggGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 103999 0.66 0.926481
Target:  5'- -cUGCGCcUGGcUGAGgcggCCCGUGGCg -3'
miRNA:   3'- ccACGUGcACCuGCUCaa--GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 137173 0.66 0.926481
Target:  5'- aGGUGCGgGaGG-CGG--UCCUGCGGCc -3'
miRNA:   3'- -CCACGUgCaCCuGCUcaAGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 137323 0.66 0.926481
Target:  5'- cGGUGCACGccgGGcCGGGggCCCuGCc-- -3'
miRNA:   3'- -CCACGUGCa--CCuGCUCaaGGG-CGucg -5'
21720 5' -55.8 NC_004812.1 + 39366 0.66 0.92542
Target:  5'- cGGccUGCACGUugcGGGCcAGcugcugaauggCCCGCAGCu -3'
miRNA:   3'- -CC--ACGUGCA---CCUGcUCaa---------GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 72505 0.66 0.921634
Target:  5'- cGGgggGCGCGccgccgccgggguccGGGCcGGcgCCCGCGGCg -3'
miRNA:   3'- -CCa--CGUGCa--------------CCUGcUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 155222 0.66 0.921084
Target:  5'- aGGggGCGCGgcgcgGGGCGGGccgUCgCGCAcgGCg -3'
miRNA:   3'- -CCa-CGUGCa----CCUGCUCa--AGgGCGU--CG- -5'
21720 5' -55.8 NC_004812.1 + 18453 0.66 0.921084
Target:  5'- cGGUgGCGCGgcggggGGGCGcGgcCCCGCGcccGCg -3'
miRNA:   3'- -CCA-CGUGCa-----CCUGCuCaaGGGCGU---CG- -5'
21720 5' -55.8 NC_004812.1 + 124447 0.66 0.921084
Target:  5'- cGGUccGCGCGgGGGCGccccgCCGCGGCg -3'
miRNA:   3'- -CCA--CGUGCaCCUGCucaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 63607 0.66 0.921084
Target:  5'- -cUGCACGUcGGcCcGG-UCCUGCGGCa -3'
miRNA:   3'- ccACGUGCA-CCuGcUCaAGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 107647 0.66 0.921084
Target:  5'- cGGgGCACGUcGcCGGGggcggCCgGCAGCa -3'
miRNA:   3'- -CCaCGUGCAcCuGCUCaa---GGgCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 124321 0.66 0.921084
Target:  5'- aGGggGCGCGgcgcgGGGCGGGccgUCgCGCAcgGCg -3'
miRNA:   3'- -CCa-CGUGCa----CCUGCUCa--AGgGCGU--CG- -5'
21720 5' -55.8 NC_004812.1 + 71376 0.66 0.921084
Target:  5'- aGUGgGCGUGGggacgggcgagGCGGGgg-UCGCAGCg -3'
miRNA:   3'- cCACgUGCACC-----------UGCUCaagGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.