miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 3' -55.2 NC_004812.1 + 52876 0.66 0.940065
Target:  5'- aGGUGaaguagcGCCGGUGcCGACGGuGCAgggCUCGa -3'
miRNA:   3'- -CCAC-------CGGCUACaGCUGUC-UGUa--GGGC- -5'
21721 3' -55.2 NC_004812.1 + 127185 0.66 0.939131
Target:  5'- cGGUGGCCuugcgGAUGUgGGCGguguagccgaucuuGAUAcCCCGg -3'
miRNA:   3'- -CCACCGG-----CUACAgCUGU--------------CUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 146519 0.66 0.93579
Target:  5'- -cUGGCCGGgcUGgUGAUAGGgGUCCUGg -3'
miRNA:   3'- ccACCGGCU--ACaGCUGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 113156 0.66 0.93579
Target:  5'- cGG-GGCgCGAggGUCGGCGGAgGgccgcgucgCCCGa -3'
miRNA:   3'- -CCaCCG-GCUa-CAGCUGUCUgUa--------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 49967 0.66 0.93579
Target:  5'- uGUGGaugaCGAUGUCGAUgccuGCGUCCuCGg -3'
miRNA:   3'- cCACCg---GCUACAGCUGuc--UGUAGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 21130 0.67 0.930818
Target:  5'- aGGcGGCCGuGUGUggcgugccgCGGCGGGgGUCUCGg -3'
miRNA:   3'- -CCaCCGGC-UACA---------GCUGUCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 98433 0.67 0.925613
Target:  5'- cGGcGGCCGcgGggCGGCAGGCGcgggggcgcCCCGu -3'
miRNA:   3'- -CCaCCGGCuaCa-GCUGUCUGUa--------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 45789 0.67 0.925613
Target:  5'- --gGGagaCGGUGUCGGCAGAgacaaCAgacgCCCGg -3'
miRNA:   3'- ccaCCg--GCUACAGCUGUCU-----GUa---GGGC- -5'
21721 3' -55.2 NC_004812.1 + 27515 0.67 0.925613
Target:  5'- gGGUGGCCacGAgcUCGGCGGuguacCAcUCCCGg -3'
miRNA:   3'- -CCACCGG--CUacAGCUGUCu----GU-AGGGC- -5'
21721 3' -55.2 NC_004812.1 + 95629 0.67 0.925613
Target:  5'- cGUGGCCGucGUCGuCGGG--UCCCGc -3'
miRNA:   3'- cCACCGGCuaCAGCuGUCUguAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 74267 0.67 0.925613
Target:  5'- --aGGCCGcgGgccucaCGGgGGGCGUCCUGa -3'
miRNA:   3'- ccaCCGGCuaCa-----GCUgUCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 100404 0.67 0.920173
Target:  5'- --cGGCCGGagGUCGAUgcgccgcgAGGCcgCCCGc -3'
miRNA:   3'- ccaCCGGCUa-CAGCUG--------UCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 126768 0.67 0.920173
Target:  5'- --cGGCUGAcUG-CGACGGGCAgaUUCCGg -3'
miRNA:   3'- ccaCCGGCU-ACaGCUGUCUGU--AGGGC- -5'
21721 3' -55.2 NC_004812.1 + 13428 0.67 0.920173
Target:  5'- gGGUGGCCGucguuUCGGgGGACgccgugGUCUCGg -3'
miRNA:   3'- -CCACCGGCuac--AGCUgUCUG------UAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 1260 0.67 0.920173
Target:  5'- --cGGCUGAcUG-CGACGGGCAgaUUCCGg -3'
miRNA:   3'- ccaCCGGCU-ACaGCUGUCUGU--AGGGC- -5'
21721 3' -55.2 NC_004812.1 + 37742 0.67 0.914499
Target:  5'- cGGcGGCCcucGcgGUCGGCgAGGCggCCCGc -3'
miRNA:   3'- -CCaCCGG---CuaCAGCUG-UCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 106203 0.67 0.914499
Target:  5'- gGGUGGCU-AUGcCGACGGAC-UUCUGc -3'
miRNA:   3'- -CCACCGGcUACaGCUGUCUGuAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 82134 0.67 0.914499
Target:  5'- gGGUGGCgGGUGcCacggGGguGAUGUCCCa -3'
miRNA:   3'- -CCACCGgCUACaG----CUguCUGUAGGGc -5'
21721 3' -55.2 NC_004812.1 + 6841 0.67 0.914499
Target:  5'- cGGcGGCCcucGcgGUCGGCgAGGCggCCCGc -3'
miRNA:   3'- -CCaCCGG---CuaCAGCUG-UCUGuaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 93013 0.67 0.908593
Target:  5'- -cUGGCCGAUGUCccacacGCGGAacaCAcCCCGg -3'
miRNA:   3'- ccACCGGCUACAGc-----UGUCU---GUaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.