miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 96722 0.66 0.880334
Target:  5'- uGCCGGGccacgaggGCCggGcCGCGGcCCcGCUCg -3'
miRNA:   3'- gUGGCCU--------UGGa-CaGCGCCaGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 141408 0.66 0.87322
Target:  5'- uGCUGGAgcgcGCCUGcCGCaGcGUCCUcCUCu -3'
miRNA:   3'- gUGGCCU----UGGACaGCG-C-CAGGAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 131189 0.67 0.865894
Target:  5'- -cCCGGGACCccccUGCGGUUCUACg- -3'
miRNA:   3'- guGGCCUUGGaca-GCGCCAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 83147 0.67 0.865894
Target:  5'- gCGCCaGGAACCUGagGCccUCCUGCa- -3'
miRNA:   3'- -GUGG-CCUUGGACagCGccAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 26043 0.67 0.865894
Target:  5'- gGCCGGGGCCgGgggCGCGGcgCC--CUCg -3'
miRNA:   3'- gUGGCCUUGGaCa--GCGCCa-GGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 151552 0.67 0.865894
Target:  5'- gGCCGGGGCCgGgggCGCGGcgCC--CUCg -3'
miRNA:   3'- gUGGCCUUGGaCa--GCGCCa-GGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 104014 0.67 0.858362
Target:  5'- aCGCCGc--CCUGuUCGCGGgccUCUACUCc -3'
miRNA:   3'- -GUGGCcuuGGAC-AGCGCCa--GGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 14570 0.67 0.858362
Target:  5'- -cCCGGGGCCUGcUCGUccucGUCCUccggggccaGCUCg -3'
miRNA:   3'- guGGCCUUGGAC-AGCGc---CAGGA---------UGAG- -5'
21721 5' -56.6 NC_004812.1 + 100987 0.67 0.850628
Target:  5'- gCGCCGGcGgCUGUaCGCGGaCCgcCUCa -3'
miRNA:   3'- -GUGGCCuUgGACA-GCGCCaGGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 81016 0.67 0.850628
Target:  5'- gCGCCGcGACCaGcgCGCGGUCCgACUg -3'
miRNA:   3'- -GUGGCcUUGGaCa-GCGCCAGGaUGAg -5'
21721 5' -56.6 NC_004812.1 + 75876 0.67 0.850628
Target:  5'- aCGCCGccuccaGGGCCaggGUCGCGGUCUUGgcgUUCg -3'
miRNA:   3'- -GUGGC------CUUGGa--CAGCGCCAGGAU---GAG- -5'
21721 5' -56.6 NC_004812.1 + 51120 0.67 0.842701
Target:  5'- cCGCCGGGcCCgGUCGCcugcuccGUCCUccGCUCc -3'
miRNA:   3'- -GUGGCCUuGGaCAGCGc------CAGGA--UGAG- -5'
21721 5' -56.6 NC_004812.1 + 45188 0.67 0.842701
Target:  5'- gGCCGGAGCCcGgcggCGCGG-CCgGCa- -3'
miRNA:   3'- gUGGCCUUGGaCa---GCGCCaGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 65195 0.67 0.842701
Target:  5'- gACCGGGACgUG-CGCGacuUCgUGCUCa -3'
miRNA:   3'- gUGGCCUUGgACaGCGCc--AGgAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 74093 0.67 0.834585
Target:  5'- -cCCGGGGCC--UCGCGGgccCCggGCUCa -3'
miRNA:   3'- guGGCCUUGGacAGCGCCa--GGa-UGAG- -5'
21721 5' -56.6 NC_004812.1 + 15049 0.67 0.834585
Target:  5'- uCACCGGGACCUGgagGCGGaCUgGCg- -3'
miRNA:   3'- -GUGGCCUUGGACag-CGCCaGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 123696 0.67 0.834585
Target:  5'- gACCGGAGCUUuauUCGCcgcgGGUCC-ACUCc -3'
miRNA:   3'- gUGGCCUUGGAc--AGCG----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 154597 0.67 0.834585
Target:  5'- gACCGGAGCUUuauUCGCcgcgGGUCC-ACUCc -3'
miRNA:   3'- gUGGCCUUGGAc--AGCG----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153535 0.68 0.809182
Target:  5'- cCGCCuGGACCgacgcgCGCGGcggccucuccuUCCUGCUCg -3'
miRNA:   3'- -GUGGcCUUGGaca---GCGCC-----------AGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 97855 0.68 0.809182
Target:  5'- gCACgUGGAcauCCUG-CGCGGgcccgccggguUCCUGCUCa -3'
miRNA:   3'- -GUG-GCCUu--GGACaGCGCC-----------AGGAUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.