miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 3' -56.8 NC_004812.1 + 97403 0.66 0.899323
Target:  5'- cGCgggCCUcggGCGCGUACUggugggucgacgGCGACGGCaUCa -3'
miRNA:   3'- -UGa--GGG---UGUGCAUGG------------UGCUGCCG-AGc -5'
21722 3' -56.8 NC_004812.1 + 24493 0.66 0.898054
Target:  5'- cGCUCCUGgACGgggggcccccgcGCCGCGGgGGCUgCGg -3'
miRNA:   3'- -UGAGGGUgUGCa-----------UGGUGCUgCCGA-GC- -5'
21722 3' -56.8 NC_004812.1 + 142656 0.66 0.892887
Target:  5'- cGC-CCCGugUugGU-CUGCGugGGCUCGc -3'
miRNA:   3'- -UGaGGGU--GugCAuGGUGCugCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 135413 0.66 0.892887
Target:  5'- cGCUCCgGCGuCGcuuccucgGCCACGACGcGCgccUCGg -3'
miRNA:   3'- -UGAGGgUGU-GCa-------UGGUGCUGC-CG---AGC- -5'
21722 3' -56.8 NC_004812.1 + 113049 0.66 0.892887
Target:  5'- gACggCCGCggccgGCGUcgGCCGCGGCGGCagCGa -3'
miRNA:   3'- -UGagGGUG-----UGCA--UGGUGCUGCCGa-GC- -5'
21722 3' -56.8 NC_004812.1 + 100024 0.66 0.892887
Target:  5'- --cCCCGCGCGgcGCCAuCGcCGcGCUCGa -3'
miRNA:   3'- ugaGGGUGUGCa-UGGU-GCuGC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 144044 0.66 0.892887
Target:  5'- uUUCCCGcCACGcucGCUAuCGACGuGCUCGc -3'
miRNA:   3'- uGAGGGU-GUGCa--UGGU-GCUGC-CGAGC- -5'
21722 3' -56.8 NC_004812.1 + 102329 0.66 0.890912
Target:  5'- uGCUgUCGCGCG-ACCggaauaaccgggguGCGACGGgUCGa -3'
miRNA:   3'- -UGAgGGUGUGCaUGG--------------UGCUGCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 107995 0.66 0.886905
Target:  5'- gUUCCCGCACGcgcgucguccggaugGCCGCGGCcGCgUCGc -3'
miRNA:   3'- uGAGGGUGUGCa--------------UGGUGCUGcCG-AGC- -5'
21722 3' -56.8 NC_004812.1 + 95226 0.66 0.886229
Target:  5'- uGCUUUCGCGCc-ACCGCGGCGGUa-- -3'
miRNA:   3'- -UGAGGGUGUGcaUGGUGCUGCCGagc -5'
21722 3' -56.8 NC_004812.1 + 102008 0.66 0.886229
Target:  5'- gACUCgCgGCGCc-GCCGCGAgggUGGCUCGu -3'
miRNA:   3'- -UGAG-GgUGUGcaUGGUGCU---GCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 19609 0.66 0.886229
Target:  5'- gGCgggCCCACGCcaGCCGCGcgucCGGuCUCGc -3'
miRNA:   3'- -UGa--GGGUGUGcaUGGUGCu---GCC-GAGC- -5'
21722 3' -56.8 NC_004812.1 + 99110 0.66 0.886229
Target:  5'- cGCUCCCACAgGccgGCCAgGACccgcagguGGC-CGa -3'
miRNA:   3'- -UGAGGGUGUgCa--UGGUgCUG--------CCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 61979 0.66 0.886229
Target:  5'- gGCgCCCGCGCccGUcucuCCGCGcccaggggccGCGGCUCGa -3'
miRNA:   3'- -UGaGGGUGUG--CAu---GGUGC----------UGCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 77440 0.66 0.886229
Target:  5'- aGCUCCCGCAgcaGcucgGCCGgGG-GGCUCGu -3'
miRNA:   3'- -UGAGGGUGUg--Ca---UGGUgCUgCCGAGC- -5'
21722 3' -56.8 NC_004812.1 + 137763 0.66 0.886229
Target:  5'- --aCCCGCugGgccgagGCgCGCGACGGUggCGg -3'
miRNA:   3'- ugaGGGUGugCa-----UG-GUGCUGCCGa-GC- -5'
21722 3' -56.8 NC_004812.1 + 22904 0.66 0.886229
Target:  5'- -gUCUgGCGCGUGCCugcgggggcggaGCGugGGgUCGc -3'
miRNA:   3'- ugAGGgUGUGCAUGG------------UGCugCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 146827 0.66 0.886229
Target:  5'- cACUCCCGCGgGacacCCGCG-CGGC-CGc -3'
miRNA:   3'- -UGAGGGUGUgCau--GGUGCuGCCGaGC- -5'
21722 3' -56.8 NC_004812.1 + 148412 0.66 0.886229
Target:  5'- -gUCUgGCGCGUGCCugcgggggcggaGCGugGGgUCGc -3'
miRNA:   3'- ugAGGgUGUGCAUGG------------UGCugCCgAGC- -5'
21722 3' -56.8 NC_004812.1 + 250 0.66 0.885551
Target:  5'- gGCUCCCGCGCGggagGaggggggggucucCCGCG-CGcGCUCc -3'
miRNA:   3'- -UGAGGGUGUGCa---U-------------GGUGCuGC-CGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.