miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 20067 0.66 0.828083
Target:  5'- cCCCGCGUCgCgcgCGccagccagcGGACGCCUCGgaGg -3'
miRNA:   3'- -GGGUGCGG-Ga--GCa--------CUUGCGGAGCgaC- -5'
21722 5' -58.8 NC_004812.1 + 48840 0.66 0.828083
Target:  5'- gCCCugGaguCCCUCGacgaGAcgagGCGCCUCGUc- -3'
miRNA:   3'- -GGGugC---GGGAGCa---CU----UGCGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 82855 0.66 0.823148
Target:  5'- aCCCgGCGCCCccgCGUGAccuucaacaugaacgACGUCaugguggCGCUGg -3'
miRNA:   3'- -GGG-UGCGGGa--GCACU---------------UGCGGa------GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 31369 0.66 0.819826
Target:  5'- gCCgGCGCgCCUgCGUGcgcacGCGCCU-GCUGc -3'
miRNA:   3'- -GGgUGCG-GGA-GCACu----UGCGGAgCGAC- -5'
21722 5' -58.8 NC_004812.1 + 82091 0.66 0.819826
Target:  5'- gCCgACGCCCUgGgc--CGCCU-GCUGg -3'
miRNA:   3'- -GGgUGCGGGAgCacuuGCGGAgCGAC- -5'
21722 5' -58.8 NC_004812.1 + 153304 0.66 0.819826
Target:  5'- cCCCugGCuCCUCcucggGUGGACGCg-CGgUGg -3'
miRNA:   3'- -GGGugCG-GGAG-----CACUUGCGgaGCgAC- -5'
21722 5' -58.8 NC_004812.1 + 111426 0.66 0.819826
Target:  5'- uCCCGgGCCUggGUGAcgcacGCGCC-CGuCUGg -3'
miRNA:   3'- -GGGUgCGGGagCACU-----UGCGGaGC-GAC- -5'
21722 5' -58.8 NC_004812.1 + 72533 0.66 0.819826
Target:  5'- gCCgGCGCCCgcggCGaacggGAaccGCGCCUCGggGg -3'
miRNA:   3'- -GGgUGCGGGa---GCa----CU---UGCGGAGCgaC- -5'
21722 5' -58.8 NC_004812.1 + 41830 0.66 0.819826
Target:  5'- -aCACGCCCUCcccguACGCCUuCGCc- -3'
miRNA:   3'- ggGUGCGGGAGcacu-UGCGGA-GCGac -5'
21722 5' -58.8 NC_004812.1 + 82342 0.66 0.819826
Target:  5'- --gACGCCCccCGUGAggcccGCgGCCUCGCa- -3'
miRNA:   3'- gggUGCGGGa-GCACU-----UG-CGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 122403 0.66 0.819826
Target:  5'- cCCCugGCuCCUCcucggGUGGACGCg-CGgUGg -3'
miRNA:   3'- -GGGugCG-GGAG-----CACUUGCGgaGCgAC- -5'
21722 5' -58.8 NC_004812.1 + 468 0.66 0.819826
Target:  5'- gCCgGCGCgCCUgCGUGcgcacGCGCCU-GCUGc -3'
miRNA:   3'- -GGgUGCG-GGA-GCACu----UGCGGAgCGAC- -5'
21722 5' -58.8 NC_004812.1 + 133151 0.66 0.819826
Target:  5'- gCCGCGCgCCUCGccGACGaCC-CGCUc -3'
miRNA:   3'- gGGUGCG-GGAGCacUUGC-GGaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 106536 0.66 0.819826
Target:  5'- gCgGCGCCUUCGUcacguACGCCggggaGCUGa -3'
miRNA:   3'- gGgUGCGGGAGCAcu---UGCGGag---CGAC- -5'
21722 5' -58.8 NC_004812.1 + 7643 0.66 0.819826
Target:  5'- gCCGCGCgCCUCGccGACGaCC-CGCUc -3'
miRNA:   3'- gGGUGCG-GGAGCacUUGC-GGaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 5657 0.66 0.818991
Target:  5'- cCCCGCGUCCgccggggggCGUcggaguccugcgcGAACGCCgCGCg- -3'
miRNA:   3'- -GGGUGCGGGa--------GCA-------------CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 19785 0.66 0.818991
Target:  5'- gUCAuCGUCCUCGUccccgcuGGGCGgcuCCUCGCUGc -3'
miRNA:   3'- gGGU-GCGGGAGCA-------CUUGC---GGAGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 131165 0.66 0.818991
Target:  5'- cCCCGCGUCCgccggggggCGUcggaguccugcgcGAACGCCgCGCg- -3'
miRNA:   3'- -GGGUGCGGGa--------GCA-------------CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 50123 0.66 0.814794
Target:  5'- aCCCGCGCCCcagccacggguucgCGUGGgggGCGCC-CgGCUc -3'
miRNA:   3'- -GGGUGCGGGa-------------GCACU---UGCGGaG-CGAc -5'
21722 5' -58.8 NC_004812.1 + 68006 0.66 0.811408
Target:  5'- -gCGCGCCC-CGUGAAagcacaggGCgUUGCUGg -3'
miRNA:   3'- ggGUGCGGGaGCACUUg-------CGgAGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.