miRNA display CGI


Results 21 - 40 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 33248 0.66 0.695004
Target:  5'- aGGACGg-GggGCGcGUCCCCGCcGGAg -3'
miRNA:   3'- -CCUGCggCgaCGCaCAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 27904 0.66 0.695004
Target:  5'- cGGGC-CCGCUGCGccgcgCCgCCGCcuGGAu -3'
miRNA:   3'- -CCUGcGGCGACGCaca--GG-GGCGu-CCU- -5'
21723 3' -61.7 NC_004812.1 + 129739 0.66 0.695004
Target:  5'- cGGACGCCGagccuggGCGUcccgguGUCCCgGUuuccGGGGu -3'
miRNA:   3'- -CCUGCGGCga-----CGCA------CAGGGgCG----UCCU- -5'
21723 3' -61.7 NC_004812.1 + 116401 0.66 0.68536
Target:  5'- cGGGCGgucgccgauCCGCUGCGgg-CCCgCGCccugGGGAc -3'
miRNA:   3'- -CCUGC---------GGCGACGCacaGGG-GCG----UCCU- -5'
21723 3' -61.7 NC_004812.1 + 28149 0.66 0.68536
Target:  5'- uGGGCG-CGCaggGCGUGcUCCUgcucuccaCGCGGGAc -3'
miRNA:   3'- -CCUGCgGCGa--CGCAC-AGGG--------GCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 87670 0.66 0.68536
Target:  5'- aGGAguCGgCGCgGCG-GUCCgCGUAGGGc -3'
miRNA:   3'- -CCU--GCgGCGaCGCaCAGGgGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 124255 0.66 0.68536
Target:  5'- gGGGCGCgCGCgGCGgcGcCCCCGUcuccGGAg -3'
miRNA:   3'- -CCUGCG-GCGaCGCa-CaGGGGCGu---CCU- -5'
21723 3' -61.7 NC_004812.1 + 81804 0.66 0.68536
Target:  5'- uGGGCGCgGUucggGCG-Gg-CCCGCGGGGg -3'
miRNA:   3'- -CCUGCGgCGa---CGCaCagGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 61037 0.66 0.68536
Target:  5'- cGGGCGCgGCcgUGCG-GUuagcccgcucgaCCCCGCcGGGg -3'
miRNA:   3'- -CCUGCGgCG--ACGCaCA------------GGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 108015 0.66 0.68536
Target:  5'- cGGAUgGCCGCggccGCGUcgCCgCCGguGGAg -3'
miRNA:   3'- -CCUG-CGGCGa---CGCAcaGG-GGCguCCU- -5'
21723 3' -61.7 NC_004812.1 + 95514 0.66 0.68536
Target:  5'- gGGGCGCCGCcuCGa--CCCCGgCGGGGc -3'
miRNA:   3'- -CCUGCGGCGacGCacaGGGGC-GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 55651 0.66 0.68536
Target:  5'- cGGACGuCCGCgGCGgcgcgCCCCGCc--- -3'
miRNA:   3'- -CCUGC-GGCGaCGCaca--GGGGCGuccu -5'
21723 3' -61.7 NC_004812.1 + 48373 0.66 0.68536
Target:  5'- cGGACGCCGCcGCcgggCCCgGCGagcuGGAg -3'
miRNA:   3'- -CCUGCGGCGaCGcacaGGGgCGU----CCU- -5'
21723 3' -61.7 NC_004812.1 + 125472 0.66 0.675676
Target:  5'- -cGCGCgGgaGCcuUGggCCCCGCGGGAg -3'
miRNA:   3'- ccUGCGgCgaCGc-ACa-GGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 31574 0.66 0.675676
Target:  5'- cGGGCGgCGCgaggggaGCGcGUCCCCGgGuccGGAg -3'
miRNA:   3'- -CCUGCgGCGa------CGCaCAGGGGCgU---CCU- -5'
21723 3' -61.7 NC_004812.1 + 30724 0.66 0.675676
Target:  5'- cGGACGCCaCgGCG--UCCgCGCAGGu -3'
miRNA:   3'- -CCUGCGGcGaCGCacAGGgGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 98412 0.66 0.675676
Target:  5'- cGGCGCCGCaGCGUcucgGUgCggcggCCGCGGGGc -3'
miRNA:   3'- cCUGCGGCGaCGCA----CAgG-----GGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 673 0.66 0.675676
Target:  5'- cGGGCGgCGCgaggggaGCGcGUCCCCGgGuccGGAg -3'
miRNA:   3'- -CCUGCgGCGa------CGCaCAGGGGCgU---CCU- -5'
21723 3' -61.7 NC_004812.1 + 144623 0.66 0.675676
Target:  5'- cGGAgcCCGCcgGCGgaaccccGcCCCCGCGGGAc -3'
miRNA:   3'- -CCUgcGGCGa-CGCa------CaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 156373 0.66 0.675676
Target:  5'- -cGCGCgGgaGCcuUGggCCCCGCGGGAg -3'
miRNA:   3'- ccUGCGgCgaCGc-ACa-GGGGCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.