miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 5' -56.8 NC_004812.1 + 141241 0.66 0.87185
Target:  5'- -uCCCUggggAGGGCGUGGUCgcuaaggaACGcCUCCa -3'
miRNA:   3'- auGGGG----UCCUGUACCGGa-------UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 28408 0.66 0.87185
Target:  5'- -uUCCCGGuACAccucGGCCcgcaggUGCGUCUCCg -3'
miRNA:   3'- auGGGGUCcUGUa---CCGG------AUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 139868 0.66 0.87185
Target:  5'- -cCCCCGGGGCGc--CCUGCGUCg-- -3'
miRNA:   3'- auGGGGUCCUGUaccGGAUGCAGagg -5'
21723 5' -56.8 NC_004812.1 + 25181 0.66 0.87185
Target:  5'- cGCUCCGGGGCGgcGUCgcgGCGgCUCCg -3'
miRNA:   3'- aUGGGGUCCUGUacCGGa--UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 103606 0.66 0.87185
Target:  5'- cGCCCCGGGACGUGcuacaGCCgcccccugGUCagcuUCCg -3'
miRNA:   3'- aUGGGGUCCUGUAC-----CGGaug-----CAG----AGG- -5'
21723 5' -56.8 NC_004812.1 + 57217 0.66 0.87112
Target:  5'- gACCCCAGccgccgcagcgccGACAcGGCgCUGCGgCUCg -3'
miRNA:   3'- aUGGGGUC-------------CUGUaCCG-GAUGCaGAGg -5'
21723 5' -56.8 NC_004812.1 + 113151 0.66 0.865198
Target:  5'- gGCUCCGGGGCGcgagggucggcggagGGCC-GCGUCgCCc -3'
miRNA:   3'- aUGGGGUCCUGUa--------------CCGGaUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 85254 0.66 0.864448
Target:  5'- --aCgCAGGACGagcUGGCCaGCGUCaCCg -3'
miRNA:   3'- augGgGUCCUGU---ACCGGaUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 137044 0.66 0.864448
Target:  5'- cACCCCAGuGcGCGUcGGCC-GCGUCgcugacggUCCg -3'
miRNA:   3'- aUGGGGUC-C-UGUA-CCGGaUGCAG--------AGG- -5'
21723 5' -56.8 NC_004812.1 + 134840 0.66 0.864448
Target:  5'- cGCCCCGGGGgGUGGCgaccgacggcGCGUCg-- -3'
miRNA:   3'- aUGGGGUCCUgUACCGga--------UGCAGagg -5'
21723 5' -56.8 NC_004812.1 + 22908 0.66 0.864448
Target:  5'- gUGCgCgGGGGCGUGGCC-GCGcCcCCg -3'
miRNA:   3'- -AUGgGgUCCUGUACCGGaUGCaGaGG- -5'
21723 5' -56.8 NC_004812.1 + 100641 0.66 0.864448
Target:  5'- gACCgCCuggcggcgcuGGACAUGGUCgACGcgCUCCu -3'
miRNA:   3'- aUGG-GGu---------CCUGUACCGGaUGCa-GAGG- -5'
21723 5' -56.8 NC_004812.1 + 124896 0.66 0.862187
Target:  5'- -cCCCCAGGACccccGGCCgggcggcgGCGggggcggcggcccaUCUCCc -3'
miRNA:   3'- auGGGGUCCUGua--CCGGa-------UGC--------------AGAGG- -5'
21723 5' -56.8 NC_004812.1 + 48230 0.66 0.862187
Target:  5'- aGCCCCGcGGCccagGGCCUccugcagcgcggcgACGUCgUCCg -3'
miRNA:   3'- aUGGGGUcCUGua--CCGGA--------------UGCAG-AGG- -5'
21723 5' -56.8 NC_004812.1 + 155797 0.66 0.862187
Target:  5'- -cCCCCAGGACccccGGCCgggcggcgGCGggggcggcggcccaUCUCCc -3'
miRNA:   3'- auGGGGUCCUGua--CCGGa-------UGC--------------AGAGG- -5'
21723 5' -56.8 NC_004812.1 + 5138 0.66 0.856838
Target:  5'- cGCCCgGGGACGgcggcgucGGCCcGCGg-UCCg -3'
miRNA:   3'- aUGGGgUCCUGUa-------CCGGaUGCagAGG- -5'
21723 5' -56.8 NC_004812.1 + 120079 0.66 0.856838
Target:  5'- gACCCCGGG-CccGGCCcccgagcCGcCUCCg -3'
miRNA:   3'- aUGGGGUCCuGuaCCGGau-----GCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 150980 0.66 0.856838
Target:  5'- gACCCCGGG-CccGGCCcccgagcCGcCUCCg -3'
miRNA:   3'- aUGGGGUCCuGuaCCGGau-----GCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 130647 0.66 0.856838
Target:  5'- cGCCCgGGGACGgcggcgucGGCCcGCGg-UCCg -3'
miRNA:   3'- aUGGGgUCCUGUa-------CCGGaUGCagAGG- -5'
21723 5' -56.8 NC_004812.1 + 144945 0.66 0.856838
Target:  5'- -cCCCCGGGGgGagaGGCCgagGCGccgCUCCc -3'
miRNA:   3'- auGGGGUCCUgUa--CCGGa--UGCa--GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.