miRNA display CGI


Results 21 - 40 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 80287 0.66 0.68491
Target:  5'- cGGCGGGagaaCCCCCaGGCG-GAcGGCGa -3'
miRNA:   3'- uCUGCCUg---GGGGGgCUGCaCU-CCGCg -5'
21724 3' -62.4 NC_004812.1 + 96297 0.66 0.683953
Target:  5'- cGACGGcggccagggcaagGCCCCCaaGGg--GGGGCGCg -3'
miRNA:   3'- uCUGCC-------------UGGGGGggCUgcaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 148919 0.66 0.679165
Target:  5'- cGACGGGCgUCCggcggcgucggcgaCGACGguggucGGGGCGCg -3'
miRNA:   3'- uCUGCCUGgGGGg-------------GCUGCa-----CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 23411 0.66 0.679165
Target:  5'- cGACGGGCgUCCggcggcgucggcgaCGACGguggucGGGGCGCg -3'
miRNA:   3'- uCUGCCUGgGGGg-------------GCUGCa-----CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 125383 0.66 0.675328
Target:  5'- uGGACGca-CCUCCCGACGUGcuGGuUGCc -3'
miRNA:   3'- -UCUGCcugGGGGGGCUGCACu-CC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 14217 0.66 0.675328
Target:  5'- --uCGGccCCgCCCCCGGCGgccacGGCGCg -3'
miRNA:   3'- ucuGCCu-GG-GGGGGCUGCacu--CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 145758 0.66 0.675328
Target:  5'- cGGGCGGAgCgaCCCGACGUccccaucGGCGUg -3'
miRNA:   3'- -UCUGCCUgGggGGGCUGCAcu-----CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 129015 0.66 0.675328
Target:  5'- -cGCGGGCCCggggccggcggCCCCGGgGgcGGGGcCGCg -3'
miRNA:   3'- ucUGCCUGGG-----------GGGGCUgCa-CUCC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 143341 0.66 0.675328
Target:  5'- gAGGCcuccGCCgCCCCGACGUcgGAGGCc- -3'
miRNA:   3'- -UCUGcc--UGGgGGGGCUGCA--CUCCGcg -5'
21724 3' -62.4 NC_004812.1 + 95841 0.66 0.675328
Target:  5'- cGACaGcGCCCCCaaCCGGaccGAGGCGCg -3'
miRNA:   3'- uCUGcC-UGGGGG--GGCUgcaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 135989 0.66 0.675328
Target:  5'- cGGACGccGCCCCCgaGACGcagucgcAGGCGCg -3'
miRNA:   3'- -UCUGCc-UGGGGGggCUGCac-----UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 112599 0.66 0.675328
Target:  5'- cGGAC-GACgCCCCCGGCuccgagGAGGCcgGCc -3'
miRNA:   3'- -UCUGcCUGgGGGGGCUGca----CUCCG--CG- -5'
21724 3' -62.4 NC_004812.1 + 74373 0.66 0.675328
Target:  5'- cGGCGGGguCCCgCCCGcgccCGUuuGGGCGCg -3'
miRNA:   3'- uCUGCCU--GGGgGGGCu---GCAc-UCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 103422 0.66 0.675328
Target:  5'- cAGA-GGAUCUCCCUGACGaGAaagagguacaGGUGCa -3'
miRNA:   3'- -UCUgCCUGGGGGGGCUGCaCU----------CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 44797 0.66 0.675328
Target:  5'- gGGAC-GACCaacaCCUCCG-CG-GGGGCGCu -3'
miRNA:   3'- -UCUGcCUGG----GGGGGCuGCaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 59083 0.66 0.675328
Target:  5'- -cACGaACCCCCCCGggcuGCG-GGGGUGg -3'
miRNA:   3'- ucUGCcUGGGGGGGC----UGCaCUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 87019 0.66 0.675328
Target:  5'- -cGCGGGCCaCCgCCGucGCGcucgGAGGCGg -3'
miRNA:   3'- ucUGCCUGG-GGgGGC--UGCa---CUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 3507 0.66 0.675328
Target:  5'- -cGCGGGCCCggggccggcggCCCCGGgGgcGGGGcCGCg -3'
miRNA:   3'- ucUGCCUGGG-----------GGGGCUgCa-CUCC-GCG- -5'
21724 3' -62.4 NC_004812.1 + 65608 0.66 0.675328
Target:  5'- cGACGGcgACUgCgCCGACGacgacGAGGCGUc -3'
miRNA:   3'- uCUGCC--UGGgGgGGCUGCa----CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 156284 0.66 0.675328
Target:  5'- uGGACGca-CCUCCCGACGUGcuGGuUGCc -3'
miRNA:   3'- -UCUGCcugGGGGGGCUGCACu-CC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.