miRNA display CGI


Results 21 - 26 of 26 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 5' -56 NC_004812.1 + 61313 0.69 0.739807
Target:  5'- -cGCGGUCGUUCaacgcgGUGGAGAGCCa--- -3'
miRNA:   3'- caCGUCGGCAAG------CACCUCUUGGgcaa -5'
21724 5' -56 NC_004812.1 + 124699 0.7 0.699811
Target:  5'- -cGCGGUCGcUCGUGGAGuGGCUCGa- -3'
miRNA:   3'- caCGUCGGCaAGCACCUC-UUGGGCaa -5'
21724 5' -56 NC_004812.1 + 29522 0.7 0.669172
Target:  5'- -gGgAGCCGUgCGgGGGGGACCCGg- -3'
miRNA:   3'- caCgUCGGCAaGCaCCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 155030 0.7 0.669172
Target:  5'- -gGgAGCCGUgCGgGGGGGACCCGg- -3'
miRNA:   3'- caCgUCGGCAaGCaCCUCUUGGGCaa -5'
21724 5' -56 NC_004812.1 + 83780 0.73 0.496612
Target:  5'- -cGCGGCCGcUCGcGGGGAGCCCc-- -3'
miRNA:   3'- caCGUCGGCaAGCaCCUCUUGGGcaa -5'
21724 5' -56 NC_004812.1 + 141343 1.05 0.004897
Target:  5'- cGUGCAGCCGUUCGUGGAGAACCCGUUc -3'
miRNA:   3'- -CACGUCGGCAAGCACCUCUUGGGCAA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.