Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21724 | 5' | -56 | NC_004812.1 | + | 61313 | 0.69 | 0.739807 |
Target: 5'- -cGCGGUCGUUCaacgcgGUGGAGAGCCa--- -3' miRNA: 3'- caCGUCGGCAAG------CACCUCUUGGgcaa -5' |
|||||||
21724 | 5' | -56 | NC_004812.1 | + | 124699 | 0.7 | 0.699811 |
Target: 5'- -cGCGGUCGcUCGUGGAGuGGCUCGa- -3' miRNA: 3'- caCGUCGGCaAGCACCUC-UUGGGCaa -5' |
|||||||
21724 | 5' | -56 | NC_004812.1 | + | 29522 | 0.7 | 0.669172 |
Target: 5'- -gGgAGCCGUgCGgGGGGGACCCGg- -3' miRNA: 3'- caCgUCGGCAaGCaCCUCUUGGGCaa -5' |
|||||||
21724 | 5' | -56 | NC_004812.1 | + | 155030 | 0.7 | 0.669172 |
Target: 5'- -gGgAGCCGUgCGgGGGGGACCCGg- -3' miRNA: 3'- caCgUCGGCAaGCaCCUCUUGGGCaa -5' |
|||||||
21724 | 5' | -56 | NC_004812.1 | + | 83780 | 0.73 | 0.496612 |
Target: 5'- -cGCGGCCGcUCGcGGGGAGCCCc-- -3' miRNA: 3'- caCGUCGGCaAGCaCCUCUUGGGcaa -5' |
|||||||
21724 | 5' | -56 | NC_004812.1 | + | 141343 | 1.05 | 0.004897 |
Target: 5'- cGUGCAGCCGUUCGUGGAGAACCCGUUc -3' miRNA: 3'- -CACGUCGGCAAGCACCUCUUGGGCAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home