miRNA display CGI


Results 21 - 40 of 618 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 60279 0.66 0.649983
Target:  5'- cCGCCUuuccgGCCCCGccgUCGCGcccccccuuggggGCCUugcccugGCCGCc -3'
miRNA:   3'- -GCGGA-----CGGGGCa--GGCGU-------------UGGA-------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 22537 0.66 0.649009
Target:  5'- gCGCCcccGCgucgggaaacgacaCCgGcCCGuCGGCCUGCCGCu -3'
miRNA:   3'- -GCGGa--CG--------------GGgCaGGC-GUUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 94470 0.66 0.649009
Target:  5'- gGCC-GCCCgCG-CCGCcgauccggccuccgGGCC-GCCGCg -3'
miRNA:   3'- gCGGaCGGG-GCaGGCG--------------UUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 47940 0.66 0.648035
Target:  5'- gGCCgGCCCgG-CgCGCGuucccggauccucCCUGCCGCc -3'
miRNA:   3'- gCGGaCGGGgCaG-GCGUu------------GGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 63972 0.66 0.646086
Target:  5'- uGCCUGCUgCG-CCucgccggccagaaggGCuuCCUGCUGCc -3'
miRNA:   3'- gCGGACGGgGCaGG---------------CGuuGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 74825 0.66 0.642187
Target:  5'- gCGCCcacaCCUCGUcccacucggccCCGCGGCCUccagcgagcGCCGCa -3'
miRNA:   3'- -GCGGac--GGGGCA-----------GGCGUUGGA---------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 67010 0.66 0.642187
Target:  5'- gGCCUcgggGCCggCCGcCCGCAGCaggGCgGCg -3'
miRNA:   3'- gCGGA----CGG--GGCaGGCGUUGga-CGgCG- -5'
21725 3' -62.6 NC_004812.1 + 102161 0.66 0.642187
Target:  5'- gCGUCgGCCCCGUCgucgGgGGCCcGCgGCg -3'
miRNA:   3'- -GCGGaCGGGGCAGg---CgUUGGaCGgCG- -5'
21725 3' -62.6 NC_004812.1 + 38026 0.66 0.642187
Target:  5'- aCGCC--CCCCGgacggCgGCGACC-GUCGCg -3'
miRNA:   3'- -GCGGacGGGGCa----GgCGUUGGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 148878 0.66 0.642187
Target:  5'- gCGCCcccgGCCUCGcCCGgcgcggaGACCcccGCCGCg -3'
miRNA:   3'- -GCGGa---CGGGGCaGGCg------UUGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 58799 0.66 0.642187
Target:  5'- cCGCCUGCauaCCGgccaCGCggUUcuugGCCGCc -3'
miRNA:   3'- -GCGGACGg--GGCag--GCGuuGGa---CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 103151 0.66 0.642187
Target:  5'- gGCCcGCUgCGUCUGgAGCgCggggGCCGCc -3'
miRNA:   3'- gCGGaCGGgGCAGGCgUUG-Ga---CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 11633 0.66 0.642187
Target:  5'- gGCCaggcGCUCCGUCCa-GACgCUcGCCGCg -3'
miRNA:   3'- gCGGa---CGGGGCAGGcgUUG-GA-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 106159 0.66 0.642187
Target:  5'- gGCCgaGCUCgGccUCgGCGGCCUcgcGCCGCa -3'
miRNA:   3'- gCGGa-CGGGgC--AGgCGUUGGA---CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 88912 0.66 0.642187
Target:  5'- cCGCCacccgcGCCCUGcUCGgAACCcugGCCGCc -3'
miRNA:   3'- -GCGGa-----CGGGGCaGGCgUUGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 41905 0.66 0.642187
Target:  5'- aCGCCgUGCaUCCGUacucccCCGCGGCCccgGgCGCg -3'
miRNA:   3'- -GCGG-ACG-GGGCA------GGCGUUGGa--CgGCG- -5'
21725 3' -62.6 NC_004812.1 + 117977 0.66 0.642187
Target:  5'- gCGCCcccgGCCUCGcCCGgcgcggaGACCcccGCCGCg -3'
miRNA:   3'- -GCGGa---CGGGGCaGGCg------UUGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 8741 0.66 0.642187
Target:  5'- aCGCCUcgacgGCCCCGaccCCcCAGgCaGCCGCg -3'
miRNA:   3'- -GCGGA-----CGGGGCa--GGcGUUgGaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 80368 0.66 0.636336
Target:  5'- gGCCUGgC-CGcCUGCGagggggaguucggggGCCUGCUGCa -3'
miRNA:   3'- gCGGACgGgGCaGGCGU---------------UGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 64703 0.66 0.632435
Target:  5'- cCGCCUGgaggccgacuuCCCCGaggCCGCGGgCaUGCgCGCc -3'
miRNA:   3'- -GCGGAC-----------GGGGCa--GGCGUUgG-ACG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.