miRNA display CGI


Results 21 - 40 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 148063 0.66 0.964724
Target:  5'- aUGCGGCuauaaaucACgggCGGuCGCCGCG-GCGa -3'
miRNA:   3'- gAUGCUGu-------UGaa-GCC-GCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 1421 0.66 0.962711
Target:  5'- -gACGGCGGCcgcggggaggggcCGGgGCCGCGAGgGc -3'
miRNA:   3'- gaUGCUGUUGaa-----------GCCgCGGUGCUCgC- -5'
21725 5' -54.3 NC_004812.1 + 126929 0.66 0.962711
Target:  5'- -gACGGCGGCcgcggggaggggcCGGgGCCGCGAGgGc -3'
miRNA:   3'- gaUGCUGUUGaa-----------GCCgCGGUGCUCgC- -5'
21725 5' -54.3 NC_004812.1 + 10278 0.66 0.961325
Target:  5'- --cCGACGGCgcgcguuugcCGGCGCCGacgccUGAGCGc -3'
miRNA:   3'- gauGCUGUUGaa--------GCCGCGGU-----GCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 106513 0.66 0.961325
Target:  5'- -cGCGGCGcgggGCgcCGGCgGCCGCG-GCGc -3'
miRNA:   3'- gaUGCUGU----UGaaGCCG-CGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 81413 0.66 0.961325
Target:  5'- cCUGCGGgAggcGCUcgCGGCa-CACGAGCGg -3'
miRNA:   3'- -GAUGCUgU---UGAa-GCCGcgGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 110297 0.66 0.961325
Target:  5'- -gGCGGCGGCUgucgcccgcgCGGCccGCCGCG-GCc -3'
miRNA:   3'- gaUGCUGUUGAa---------GCCG--CGGUGCuCGc -5'
21725 5' -54.3 NC_004812.1 + 571 0.66 0.961325
Target:  5'- -cGCGGCcGCgu-GGaGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGuUGaagCCgCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 30828 0.66 0.961325
Target:  5'- -cAgGGCGGCgccaGGCGCCGCccggGGGCGc -3'
miRNA:   3'- gaUgCUGUUGaag-CCGCGGUG----CUCGC- -5'
21725 5' -54.3 NC_004812.1 + 5806 0.66 0.961325
Target:  5'- nCUGCGG-GGCUgcggGGCGCgGCGGGCu -3'
miRNA:   3'- -GAUGCUgUUGAag--CCGCGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 31472 0.66 0.961325
Target:  5'- -cGCGGCcGCgu-GGaGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGuUGaagCCgCGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 109460 0.66 0.961325
Target:  5'- -gGCGGC-GCgggGGCGcCCGCGGGCu -3'
miRNA:   3'- gaUGCUGuUGaagCCGC-GGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 104960 0.66 0.961325
Target:  5'- -cGCGGCGgggagagggGCUcUCGGCgcgcacgcgGCCGCGGGCc -3'
miRNA:   3'- gaUGCUGU---------UGA-AGCCG---------CGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 102050 0.66 0.961325
Target:  5'- -aACGAUGGCgaggcCGGgGCCGCGccgGGCGc -3'
miRNA:   3'- gaUGCUGUUGaa---GCCgCGGUGC---UCGC- -5'
21725 5' -54.3 NC_004812.1 + 84697 0.66 0.961325
Target:  5'- -cGCuGCAGCgcccgCGGCGCCGCGccGCc -3'
miRNA:   3'- gaUGcUGUUGaa---GCCGCGGUGCu-CGc -5'
21725 5' -54.3 NC_004812.1 + 36707 0.66 0.961325
Target:  5'- nCUGCGG-GGCUgcggGGCGCgGCGGGCu -3'
miRNA:   3'- -GAUGCUgUUGAag--CCGCGgUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 70949 0.66 0.961325
Target:  5'- -gGCGGCGuACUgCGGCGCCuCGAccuGCc -3'
miRNA:   3'- gaUGCUGU-UGAaGCCGCGGuGCU---CGc -5'
21725 5' -54.3 NC_004812.1 + 14192 0.66 0.961325
Target:  5'- -cGCgGACAACUgcgUCGccGCGCCAgggcCGGGCGc -3'
miRNA:   3'- gaUG-CUGUUGA---AGC--CGCGGU----GCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 74852 0.66 0.961325
Target:  5'- -cGCGGCcuCcagCGaGCGCCGCaGGGCGg -3'
miRNA:   3'- gaUGCUGuuGaa-GC-CGCGGUG-CUCGC- -5'
21725 5' -54.3 NC_004812.1 + 39082 0.66 0.960973
Target:  5'- gUGCGugAGCcgCGGCacggccaccgacgGCCGCGucGCGg -3'
miRNA:   3'- gAUGCugUUGaaGCCG-------------CGGUGCu-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.