miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 105188 0.66 0.942719
Target:  5'- -gGUGGCGGGGcggagGCGgGUgguggGCGAGCg -3'
miRNA:   3'- caCGCCGCUCUa----CGCgUAga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 128999 0.66 0.942719
Target:  5'- -cGCGGCGGGccGCGgGc--GCGGGCc -3'
miRNA:   3'- caCGCCGCUCuaCGCgUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152763 0.66 0.942719
Target:  5'- -cGCGGCGAccacgGCGCAg--AgGGGCg -3'
miRNA:   3'- caCGCCGCUcua--CGCGUagaUgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152856 0.66 0.942719
Target:  5'- -gGCGGCGGGcUGgGCcugagcgGCGGGCc -3'
miRNA:   3'- caCGCCGCUCuACgCGuaga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 81527 0.66 0.942719
Target:  5'- -gGCGGagaGGGUGCGCAUgUGaauccgGAGCa -3'
miRNA:   3'- caCGCCgc-UCUACGCGUAgAUg-----CUCG- -5'
21726 3' -54.8 NC_004812.1 + 26667 0.66 0.942719
Target:  5'- -gGcCGGCGaAGAUGCGCuggaggGCGGGg -3'
miRNA:   3'- caC-GCCGC-UCUACGCGuaga--UGCUCg -5'
21726 3' -54.8 NC_004812.1 + 109321 0.66 0.942719
Target:  5'- -gGCGGCGcuGGAggcgGCGCcgcgCUACcgGGGCg -3'
miRNA:   3'- caCGCCGC--UCUa---CGCGua--GAUG--CUCG- -5'
21726 3' -54.8 NC_004812.1 + 71216 0.66 0.942719
Target:  5'- -gGCGGCGAGcgG-GCggCcGCGAGg -3'
miRNA:   3'- caCGCCGCUCuaCgCGuaGaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 121862 0.66 0.942719
Target:  5'- -cGCGGCGAccacgGCGCAg--AgGGGCg -3'
miRNA:   3'- caCGCCGCUcua--CGCGUagaUgCUCG- -5'
21726 3' -54.8 NC_004812.1 + 60071 0.66 0.942719
Target:  5'- -aGCGGCaGGGcggaGCGCAcgCggGCGAGCc -3'
miRNA:   3'- caCGCCG-CUCua--CGCGUa-Ga-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 155567 0.66 0.942719
Target:  5'- -aGgGGgGAGggGCGCGc--GCGGGCg -3'
miRNA:   3'- caCgCCgCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 121955 0.66 0.942719
Target:  5'- -gGCGGCGGGcUGgGCcugagcgGCGGGCc -3'
miRNA:   3'- caCGCCGCUCuACgCGuaga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 123564 0.66 0.937997
Target:  5'- -gGCGaGCGAGGcgGCGCGgc--CGGGCu -3'
miRNA:   3'- caCGC-CGCUCUa-CGCGUagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 22899 0.66 0.937997
Target:  5'- --aCGGcCGAGGUGCGCGgggGCGuGGCc -3'
miRNA:   3'- cacGCC-GCUCUACGCGUagaUGC-UCG- -5'
21726 3' -54.8 NC_004812.1 + 43491 0.66 0.937997
Target:  5'- -cGCGGCGcgucucGGUGCGCGUCaGCc-GCu -3'
miRNA:   3'- caCGCCGCu-----CUACGCGUAGaUGcuCG- -5'
21726 3' -54.8 NC_004812.1 + 101116 0.66 0.937997
Target:  5'- -cGCGGuCGAGcaugGCGCGcagCUcggcccaguagGCGAGCg -3'
miRNA:   3'- caCGCC-GCUCua--CGCGUa--GA-----------UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 110731 0.66 0.937997
Target:  5'- -gGCaGGCGGGAgacccuCGCGgaggUCUugGGGCg -3'
miRNA:   3'- caCG-CCGCUCUac----GCGU----AGAugCUCG- -5'
21726 3' -54.8 NC_004812.1 + 100376 0.66 0.937997
Target:  5'- -cGCGGaCGAGucgGCGCG-CcGCGAGg -3'
miRNA:   3'- caCGCC-GCUCua-CGCGUaGaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 154465 0.66 0.937997
Target:  5'- -gGCGaGCGAGGcgGCGCGgc--CGGGCu -3'
miRNA:   3'- caCGC-CGCUCUa-CGCGUagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 88305 0.66 0.937997
Target:  5'- cUGCGGCGAGcugcuggugGCGUGUC-ACGugauuGGCg -3'
miRNA:   3'- cACGCCGCUCua-------CGCGUAGaUGC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.