miRNA display CGI


Results 21 - 40 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 70563 0.66 0.631167
Target:  5'- uUCGCaCGUAGC-GCCgCGAGaggGCCGCg -3'
miRNA:   3'- -GGUGgGCGUCGaCGG-GCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 92770 0.66 0.631167
Target:  5'- gCCGCCCGCGGC-GUUCa--UGUCGCUg -3'
miRNA:   3'- -GGUGGGCGUCGaCGGGcucACGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 78047 0.66 0.631167
Target:  5'- -gGCCCGCAgGCggcGCUCGAGcuCCGCg -3'
miRNA:   3'- ggUGGGCGU-CGa--CGGGCUCacGGCGa -5'
21726 5' -62.7 NC_004812.1 + 126906 0.66 0.631167
Target:  5'- cCCGCUcuuCGCGGCccgGcCCCGAcGgcgGCCGCg -3'
miRNA:   3'- -GGUGG---GCGUCGa--C-GGGCU-Ca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 17908 0.66 0.631167
Target:  5'- gCGCCCGCGGUcGUCCGGGcgcgagGCC-Cg -3'
miRNA:   3'- gGUGGGCGUCGaCGGGCUCa-----CGGcGa -5'
21726 5' -62.7 NC_004812.1 + 1398 0.66 0.631167
Target:  5'- cCCGCUcuuCGCGGCccgGcCCCGAcGgcgGCCGCg -3'
miRNA:   3'- -GGUGG---GCGUCGa--C-GGGCU-Ca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 118851 0.66 0.630188
Target:  5'- uCCGCCCcCGGCggGCCgccucgccgaccgCGAGgGCCGCc -3'
miRNA:   3'- -GGUGGGcGUCGa-CGG-------------GCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 149752 0.66 0.630188
Target:  5'- uCCGCCCcCGGCggGCCgccucgccgaccgCGAGgGCCGCc -3'
miRNA:   3'- -GGUGGGcGUCGa-CGG-------------GCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 145306 0.66 0.62725
Target:  5'- cCCGCCCcgcggcgccccgcGCGGCgcgccucgugggcgUGCUCGGGgcgGCCGUg -3'
miRNA:   3'- -GGUGGG-------------CGUCG--------------ACGGGCUCa--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 5588 0.66 0.621376
Target:  5'- gCgGCCCGuCGGCgggGUCCugcGAG-GCCGCg -3'
miRNA:   3'- -GgUGGGC-GUCGa--CGGG---CUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 127017 0.66 0.621376
Target:  5'- cCgGCCCGCGccGCcGCgCGAGggcaUGCCGCc -3'
miRNA:   3'- -GgUGGGCGU--CGaCGgGCUC----ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 1509 0.66 0.621376
Target:  5'- cCgGCCCGCGccGCcGCgCGAGggcaUGCCGCc -3'
miRNA:   3'- -GgUGGGCGU--CGaCGgGCUC----ACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 83730 0.66 0.621376
Target:  5'- uUCugCCGgGGaCgcggGCCCGGcUGCCGCc -3'
miRNA:   3'- -GGugGGCgUC-Ga---CGGGCUcACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 59205 0.66 0.621376
Target:  5'- cCCACCaGUAcGC-GCCCGAG-GcCCGCg -3'
miRNA:   3'- -GGUGGgCGU-CGaCGGGCUCaC-GGCGa -5'
21726 5' -62.7 NC_004812.1 + 154809 0.66 0.621376
Target:  5'- -gGCgCGCAGCcgggGCCCGA-UGCaCGCg -3'
miRNA:   3'- ggUGgGCGUCGa---CGGGCUcACG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 20745 0.66 0.621376
Target:  5'- aCCACCUGUGGgUGgUCGGG-GCgGCUg -3'
miRNA:   3'- -GGUGGGCGUCgACgGGCUCaCGgCGA- -5'
21726 5' -62.7 NC_004812.1 + 131096 0.66 0.621376
Target:  5'- gCgGCCCGuCGGCgggGUCCugcGAG-GCCGCg -3'
miRNA:   3'- -GgUGGGC-GUCGa--CGGG---CUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 78851 0.66 0.621376
Target:  5'- uCC-CCCG-AGgaGCCCGGGgagggcggagGCCGCc -3'
miRNA:   3'- -GGuGGGCgUCgaCGGGCUCa---------CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 76262 0.66 0.621376
Target:  5'- -gGCCCgGCuguGCggGCCCGGGgGUCGCa -3'
miRNA:   3'- ggUGGG-CGu--CGa-CGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 29301 0.66 0.621376
Target:  5'- -gGCgCGCAGCcgggGCCCGA-UGCaCGCg -3'
miRNA:   3'- ggUGgGCGUCGa---CGGGCUcACG-GCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.