Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21727 | 3' | -64 | NC_004812.1 | + | 124414 | 0.66 | 0.574296 |
Target: 5'- aGCGGGCCgUGCUgGaCGUGGCccggaggcacccgGUCCg- -3' miRNA: 3'- -UGCCUGGgACGAgC-GCGCCG-------------CAGGga -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 108399 | 0.66 | 0.571427 |
Target: 5'- -gGGGCUCcGCUCGCGCcGGCGcacguggcgcggaCCCUc -3' miRNA: 3'- ugCCUGGGaCGAGCGCG-CCGCa------------GGGA- -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 71053 | 0.66 | 0.569517 |
Target: 5'- gGCGGccgcCCCUGCggcgguucgggcggCGCGgGGCGUUCg- -3' miRNA: 3'- -UGCCu---GGGACGa-------------GCGCgCCGCAGGga -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 96 | 0.66 | 0.565701 |
Target: 5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3' miRNA: 3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 51884 | 0.66 | 0.565701 |
Target: 5'- uGCGcGGCCgUGggCGCGUGGCGgccacgcacgCCCg -3' miRNA: 3'- -UGC-CUGGgACgaGCGCGCCGCa---------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 89443 | 0.66 | 0.565701 |
Target: 5'- uGCGGGCCUacugGCUgGCccuGCGGCG-CCUc -3' miRNA: 3'- -UGCCUGGGa---CGAgCG---CGCCGCaGGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 156506 | 0.66 | 0.565701 |
Target: 5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3' miRNA: 3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 30997 | 0.66 | 0.565701 |
Target: 5'- gACGGGCCgggGCgCGCGCGGgGccgggagCCCg -3' miRNA: 3'- -UGCCUGGga-CGaGCGCGCCgCa------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 93720 | 0.66 | 0.565701 |
Target: 5'- cGCGGuaguaggGCaCGCGCGGCGUCUCg -3' miRNA: 3'- -UGCCuggga--CGaGCGCGCCGCAGGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 32662 | 0.66 | 0.564748 |
Target: 5'- cCGGGCUggGCUCGCGCGGgaggaggccgggcCGgCCCg -3' miRNA: 3'- uGCCUGGgaCGAGCGCGCC-------------GCaGGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 51855 | 0.66 | 0.563795 |
Target: 5'- cCGGACCCacagGC-CGgGCGGCGgggcgaauuucgCCCc -3' miRNA: 3'- uGCCUGGGa---CGaGCgCGCCGCa-----------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 5985 | 0.66 | 0.559989 |
Target: 5'- uAUGGGCCCacgccccggaacgcGCgucggCGCGCGGCGgcgccgCCCc -3' miRNA: 3'- -UGCCUGGGa-------------CGa----GCGCGCCGCa-----GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 38361 | 0.66 | 0.556191 |
Target: 5'- -aGGAacuccUCCUGCaggCGgGCGGCGgggCCCg -3' miRNA: 3'- ugCCU-----GGGACGa--GCgCGCCGCa--GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 38973 | 0.66 | 0.556191 |
Target: 5'- cCGcGACCCcGC-CGCGCccGGCGgCCCg -3' miRNA: 3'- uGC-CUGGGaCGaGCGCG--CCGCaGGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 138060 | 0.66 | 0.556191 |
Target: 5'- aGCGGGCCCgcgccgcGCUggccgcgaGCGCGaGCGaagCCCUg -3' miRNA: 3'- -UGCCUGGGa------CGAg-------CGCGC-CGCa--GGGA- -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 148271 | 0.66 | 0.556191 |
Target: 5'- gGCGGccgcGCCCgGCa-GCGCGGCGgcggcgccggCCCg -3' miRNA: 3'- -UGCC----UGGGaCGagCGCGCCGCa---------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 117370 | 0.66 | 0.556191 |
Target: 5'- gGCGGccgcGCCCgGCa-GCGCGGCGgcggcgccggCCCg -3' miRNA: 3'- -UGCC----UGGGaCGagCGCGCCGCa---------GGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 8072 | 0.66 | 0.556191 |
Target: 5'- cCGcGACCCcGC-CGCGCccGGCGgCCCg -3' miRNA: 3'- uGC-CUGGGaCGaGCGCG--CCGCaGGGa -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 147804 | 0.66 | 0.556191 |
Target: 5'- uCGGGgCUggcgagGCUCGCGUGGU-UCCCUc -3' miRNA: 3'- uGCCUgGGa-----CGAGCGCGCCGcAGGGA- -5' |
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21727 | 3' | -64 | NC_004812.1 | + | 75916 | 0.66 | 0.546727 |
Target: 5'- cGCGaGGgCCUGCUCgGCGCGcuuGCGgaagUCCCg -3' miRNA: 3'- -UGC-CUgGGACGAG-CGCGC---CGC----AGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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