miRNA display CGI


Results 21 - 40 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 107578 0.66 0.938253
Target:  5'- gCGGCGGCGgCGCGGUuGAccucGUCCGc- -3'
miRNA:   3'- gGUCGCUGCgGCGCUAcCU----UAGGUcu -5'
21727 5' -55.5 NC_004812.1 + 80309 0.66 0.938253
Target:  5'- aCGGCGaccGCGCCGCGcugcUGGAGgcggCCGc- -3'
miRNA:   3'- gGUCGC---UGCGGCGCu---ACCUUa---GGUcu -5'
21727 5' -55.5 NC_004812.1 + 100831 0.66 0.938253
Target:  5'- -gGGCgGGCGCCGCGAcgccgGGGAgggCgAGGa -3'
miRNA:   3'- ggUCG-CUGCGGCGCUa----CCUUa--GgUCU- -5'
21727 5' -55.5 NC_004812.1 + 6304 0.66 0.938253
Target:  5'- -gAGCGGCGCCcccgggcacGCGggGGGccCCGGGc -3'
miRNA:   3'- ggUCGCUGCGG---------CGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 37205 0.66 0.938253
Target:  5'- -gAGCGGCGCCcccgggcacGCGggGGGccCCGGGc -3'
miRNA:   3'- ggUCGCUGCGG---------CGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 111558 0.66 0.938253
Target:  5'- aCCAGCGGCGCUGCauguucggcGUGGugagcCCGGc -3'
miRNA:   3'- -GGUCGCUGCGGCGc--------UACCuua--GGUCu -5'
21727 5' -55.5 NC_004812.1 + 25909 0.66 0.938253
Target:  5'- cCCAGCGccgcgggcgcGCGUCGCGA--GAG-CCGGAc -3'
miRNA:   3'- -GGUCGC----------UGCGGCGCUacCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 102320 0.66 0.938253
Target:  5'- uCCGGCGGCuGCugucgCGCGAccGGAAUaaCCGGGg -3'
miRNA:   3'- -GGUCGCUG-CG-----GCGCUa-CCUUA--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 155903 0.66 0.938253
Target:  5'- gCCGGCGcccggGCuGCCGCGccgaGGAggCCGGGc -3'
miRNA:   3'- -GGUCGC-----UG-CGGCGCua--CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 106775 0.66 0.938253
Target:  5'- -gGGCGGCGUCGgGcgGGGcgCgCGGGa -3'
miRNA:   3'- ggUCGCUGCGGCgCuaCCUuaG-GUCU- -5'
21727 5' -55.5 NC_004812.1 + 42459 0.66 0.936819
Target:  5'- gCCGGCcgcauccaucucccGACGCCGUucUGGuuUCCGGu -3'
miRNA:   3'- -GGUCG--------------CUGCGGCGcuACCuuAGGUCu -5'
21727 5' -55.5 NC_004812.1 + 5585 0.66 0.933391
Target:  5'- gCGGCGGC-CCGuCGgcGGggUCCugcGAg -3'
miRNA:   3'- gGUCGCUGcGGC-GCuaCCuuAGGu--CU- -5'
21727 5' -55.5 NC_004812.1 + 141979 0.66 0.933391
Target:  5'- aCCGGCugGAgGCCGCGcgGGugccCCGGc -3'
miRNA:   3'- -GGUCG--CUgCGGCGCuaCCuua-GGUCu -5'
21727 5' -55.5 NC_004812.1 + 44421 0.66 0.933391
Target:  5'- cCCGG-GGCGCCGgGcgGGAAcCCGc- -3'
miRNA:   3'- -GGUCgCUGCGGCgCuaCCUUaGGUcu -5'
21727 5' -55.5 NC_004812.1 + 105828 0.66 0.933391
Target:  5'- gCCGGCGGCGgCGCGG-GGuucAUCuCGGc -3'
miRNA:   3'- -GGUCGCUGCgGCGCUaCCu--UAG-GUCu -5'
21727 5' -55.5 NC_004812.1 + 124046 0.66 0.933391
Target:  5'- gCC-GCGGCGCCGCGGccaacgGGGGagCGGc -3'
miRNA:   3'- -GGuCGCUGCGGCGCUa-----CCUUagGUCu -5'
21727 5' -55.5 NC_004812.1 + 100914 0.66 0.933391
Target:  5'- gCGGaGACgGCCGCGA-GGAcgggCCGGAg -3'
miRNA:   3'- gGUCgCUG-CGGCGCUaCCUua--GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 131093 0.66 0.933391
Target:  5'- gCGGCGGC-CCGuCGgcGGggUCCugcGAg -3'
miRNA:   3'- gGUCGCUGcGGC-GCuaCCuuAGGu--CU- -5'
21727 5' -55.5 NC_004812.1 + 154947 0.66 0.933391
Target:  5'- gCC-GCGGCGCCGCGGccaacgGGGGagCGGc -3'
miRNA:   3'- -GGuCGCUGCGGCGCUa-----CCUUagGUCu -5'
21727 5' -55.5 NC_004812.1 + 23420 0.66 0.933391
Target:  5'- uCCGGCGGCGUCGgCGAcgacGGuGGUCgGGGc -3'
miRNA:   3'- -GGUCGCUGCGGC-GCUa---CC-UUAGgUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.