Results 21 - 40 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21728 | 3' | -56 | NC_004812.1 | + | 154407 | 0.66 | 0.913583 |
Target: 5'- cCGGGcCGGGGCUCCaaggccgcgagaGGGcUCCAugGGUUCg -3' miRNA: 3'- -GUUC-GCUCCGAGG------------CCCaAGGU--CUAGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 146671 | 0.66 | 0.912996 |
Target: 5'- uGAGCGGGuucgagaGCUCC-GGUUCCAaGA-CCg -3' miRNA: 3'- gUUCGCUC-------CGAGGcCCAAGGU-CUaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 83549 | 0.66 | 0.90761 |
Target: 5'- gGAGCGcGGuCUCCGGGaggCCGuGcgCCc -3' miRNA: 3'- gUUCGCuCC-GAGGCCCaa-GGU-CuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 93726 | 0.66 | 0.90761 |
Target: 5'- gGAGCcGGGCUCCGcGGcagaCGGggCCg -3' miRNA: 3'- gUUCGcUCCGAGGC-CCaag-GUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 156107 | 0.66 | 0.90761 |
Target: 5'- -cAGCGGGGa-CCGGGggCCGGGa-- -3' miRNA: 3'- guUCGCUCCgaGGCCCaaGGUCUagg -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 3677 | 0.66 | 0.90761 |
Target: 5'- gGGGCGcAGGCUCUG-GUUCUGGAa-- -3' miRNA: 3'- gUUCGC-UCCGAGGCcCAAGGUCUagg -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 30599 | 0.66 | 0.90761 |
Target: 5'- -cAGCGGGGa-CCGGGggCCGGGa-- -3' miRNA: 3'- guUCGCUCCgaGGCCCaaGGUCUagg -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 105211 | 0.66 | 0.90761 |
Target: 5'- uGGGCGAGcGCgCCGGcggCCGGcgCCu -3' miRNA: 3'- gUUCGCUC-CGaGGCCcaaGGUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 69517 | 0.66 | 0.90761 |
Target: 5'- uCGAGacgGAGGCcgCCGGG-UCCGGccgCCc -3' miRNA: 3'- -GUUCg--CUCCGa-GGCCCaAGGUCua-GG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 59194 | 0.66 | 0.90761 |
Target: 5'- gCGGGCaGGGCccgCCGGcGUgcgggUCCAGcgCCa -3' miRNA: 3'- -GUUCGcUCCGa--GGCC-CA-----AGGUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 148181 | 0.66 | 0.90761 |
Target: 5'- gCGGGCGGGGgcggcggcCUCCGGuacggCCGGggCCg -3' miRNA: 3'- -GUUCGCUCC--------GAGGCCcaa--GGUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 81427 | 0.66 | 0.90761 |
Target: 5'- -cGGCcauGGCgUCCGGGgcCCAGggCCc -3' miRNA: 3'- guUCGcu-CCG-AGGCCCaaGGUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 117280 | 0.66 | 0.90761 |
Target: 5'- gCGGGCGGGGgcggcggcCUCCGGuacggCCGGggCCg -3' miRNA: 3'- -GUUCGCUCC--------GAGGCCcaa--GGUCuaGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 129185 | 0.66 | 0.90761 |
Target: 5'- gGGGCGcAGGCUCUG-GUUCUGGAa-- -3' miRNA: 3'- gUUCGC-UCCGAGGCcCAAGGUCUagg -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 134556 | 0.66 | 0.906387 |
Target: 5'- --uGCG-GGCUCCGGGgcgaaaaaaacgUCCAcguGGUCg -3' miRNA: 3'- guuCGCuCCGAGGCCCa-----------AGGU---CUAGg -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 106357 | 0.66 | 0.902035 |
Target: 5'- -cGGCGA-GCUCCGGGUggaccucaccuucgcCCGGGUUUc -3' miRNA: 3'- guUCGCUcCGAGGCCCAa--------------GGUCUAGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 74103 | 0.66 | 0.901405 |
Target: 5'- --cGCG-GGCcCCGGGcUCagcgAGAUCCa -3' miRNA: 3'- guuCGCuCCGaGGCCCaAGg---UCUAGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 117648 | 0.66 | 0.901405 |
Target: 5'- -cGGCGGGGUcgcgggccggCCGGGcgCCGGGgggugCCg -3' miRNA: 3'- guUCGCUCCGa---------GGCCCaaGGUCUa----GG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 39860 | 0.66 | 0.901405 |
Target: 5'- gGGGCcgGGGGCUCCGccauGGcgCguGGUCCu -3' miRNA: 3'- gUUCG--CUCCGAGGC----CCaaGguCUAGG- -5' |
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21728 | 3' | -56 | NC_004812.1 | + | 26399 | 0.66 | 0.901405 |
Target: 5'- uGGGCGAcagccgcccggGGCUCUGGGgcgcgCCGGAg-- -3' miRNA: 3'- gUUCGCU-----------CCGAGGCCCaa---GGUCUagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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