miRNA display CGI


Results 21 - 40 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 119786 0.66 0.752099
Target:  5'- cCGggGGCcuGcCCCGgGGUCUGCCu- -3'
miRNA:   3'- cGCuuCCGc-CuGGGCaCCAGGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 108656 0.66 0.752099
Target:  5'- gGCGGcaGGGaGGAUCCG-GGaacgCgCGCCGGg -3'
miRNA:   3'- -CGCU--UCCgCCUGGGCaCCa---G-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 77569 0.66 0.752099
Target:  5'- aCGAccGGcGCGGagGCCaCGUGGUaCCGgCGGu -3'
miRNA:   3'- cGCU--UC-CGCC--UGG-GCACCA-GGCgGCC- -5'
21728 5' -61.3 NC_004812.1 + 147481 0.66 0.752099
Target:  5'- aGC-AGGGCGa--CCGUGGcgCCGCgGGg -3'
miRNA:   3'- -CGcUUCCGCcugGGCACCa-GGCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 153084 0.66 0.752099
Target:  5'- gGCGcc-GCGGcCCCGcccccgGGgCCGCCGGc -3'
miRNA:   3'- -CGCuucCGCCuGGGCa-----CCaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 44218 0.66 0.752099
Target:  5'- cGCGGacGGGCGaacGCgUGUGG-CCGCCGc -3'
miRNA:   3'- -CGCU--UCCGCc--UGgGCACCaGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 19307 0.66 0.752099
Target:  5'- gGCGAAcGCGGGCCCccagguacguGUagaGGUCgGaCCGGu -3'
miRNA:   3'- -CGCUUcCGCCUGGG----------CA---CCAGgC-GGCC- -5'
21728 5' -61.3 NC_004812.1 + 146858 0.66 0.752099
Target:  5'- cGCGcc-GCGGGCCUGguggcGGUCCccucCCGGg -3'
miRNA:   3'- -CGCuucCGCCUGGGCa----CCAGGc---GGCC- -5'
21728 5' -61.3 NC_004812.1 + 112579 0.66 0.752099
Target:  5'- cGCGcAGGU-GACgCGcGG-CCGCCGGa -3'
miRNA:   3'- -CGCuUCCGcCUGgGCaCCaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 92559 0.66 0.752099
Target:  5'- uCGccGGCacGGCCCGUGG-CCGUCGu -3'
miRNA:   3'- cGCuuCCGc-CUGGGCACCaGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 27576 0.66 0.752099
Target:  5'- gGCGcc-GCGGcCCCGcccccgGGgCCGCCGGc -3'
miRNA:   3'- -CGCuucCGCCuGGGCa-----CCaGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 91907 0.66 0.75119
Target:  5'- cGCGggGGCccugaGGGCCCGccgcuugauuagaUGGUgCGUgUGGg -3'
miRNA:   3'- -CGCuuCCG-----CCUGGGC-------------ACCAgGCG-GCC- -5'
21728 5' -61.3 NC_004812.1 + 8406 0.66 0.742972
Target:  5'- nGCGggGGCucGGcCCCGgccguaccGGaggCCGCCGc -3'
miRNA:   3'- -CGCuuCCG--CCuGGGCa-------CCa--GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 81988 0.66 0.742972
Target:  5'- gGCGggGGCcgucgaggagcuGGGCguggCCGUGGagCGCCa- -3'
miRNA:   3'- -CGCuuCCG------------CCUG----GGCACCagGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 39307 0.66 0.742972
Target:  5'- nGCGggGGCucGGcCCCGgccguaccGGaggCCGCCGc -3'
miRNA:   3'- -CGCuuCCG--CCuGGGCa-------CCa--GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 1490 0.66 0.742972
Target:  5'- gGCGgcGGCGGAgCgCCGgccGGcccgcgCCGCCGc -3'
miRNA:   3'- -CGCuuCCGCCU-G-GGCa--CCa-----GGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 2691 0.66 0.742972
Target:  5'- cGCGAAGacgcCGGGCCCGaagacgCgGCCGGa -3'
miRNA:   3'- -CGCUUCc---GCCUGGGCacca--GgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 18873 0.66 0.742972
Target:  5'- cCGggGGuCGGcgGCCCGcgGGU-CGCCGcGg -3'
miRNA:   3'- cGCuuCC-GCC--UGGGCa-CCAgGCGGC-C- -5'
21728 5' -61.3 NC_004812.1 + 72171 0.66 0.742972
Target:  5'- gGCG-AGGCGGACCCGgaacccccUUCGCgCGa -3'
miRNA:   3'- -CGCuUCCGCCUGGGCacc-----AGGCG-GCc -5'
21728 5' -61.3 NC_004812.1 + 96852 0.66 0.742972
Target:  5'- uGCGAcGGCGGGgugaUCGUcGG-CCGCCaGGa -3'
miRNA:   3'- -CGCUuCCGCCUg---GGCA-CCaGGCGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.