miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 54638 0.66 0.979661
Target:  5'- ---cGCGCGGGCgGcgGgcgucCGCGGCCCc -3'
miRNA:   3'- cuacUGUGCUCGgCuaUa----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 73198 0.66 0.979661
Target:  5'- gGcgGGCG-GGGCCGGgacguccUCGCGGCCg -3'
miRNA:   3'- -CuaCUGUgCUCGGCUau-----AGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 30067 0.66 0.979661
Target:  5'- --gGGCGCGcgcgggcGGCCGGgcccucgcgggggCGCGGCCCc -3'
miRNA:   3'- cuaCUGUGC-------UCGGCUaua----------GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 94269 0.66 0.979661
Target:  5'- --cGcCGCGGGCgCGcgc-CGCGGCCCg -3'
miRNA:   3'- cuaCuGUGCUCG-GCuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 122359 0.66 0.979661
Target:  5'- --cGGCGgGGGCCGGgg-CGCGgggcgcggcgGCCCc -3'
miRNA:   3'- cuaCUGUgCUCGGCUauaGCGC----------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 51089 0.66 0.979661
Target:  5'- --cGGUACGAgGCCGAg--CGCGACUg -3'
miRNA:   3'- cuaCUGUGCU-CGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 155576 0.66 0.979661
Target:  5'- --gGGCGCGcgcgggcGGCCGGgcccucgcgggggCGCGGCCCc -3'
miRNA:   3'- cuaCUGUGC-------UCGGCUaua----------GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 65077 0.66 0.979661
Target:  5'- gGcgGACGCGGGCuCGcgucCGCaGGCCCc -3'
miRNA:   3'- -CuaCUGUGCUCG-GCuauaGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 40106 0.66 0.979661
Target:  5'- --gGGCGCGcGuCCGuc--CGCGACCCc -3'
miRNA:   3'- cuaCUGUGCuC-GGCuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 121156 0.66 0.979661
Target:  5'- gGGUGGCGCGAGuCCaGAcUGUggaagcUGCGGCCg -3'
miRNA:   3'- -CUACUGUGCUC-GG-CU-AUA------GCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 110983 0.66 0.979661
Target:  5'- ---aGCACGGGCgGAacagccgCGCGACCg -3'
miRNA:   3'- cuacUGUGCUCGgCUaua----GCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 49883 0.66 0.979661
Target:  5'- --gGACgAUGGGCCccgc-CGCGACCCc -3'
miRNA:   3'- cuaCUG-UGCUCGGcuauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 103165 0.66 0.979661
Target:  5'- gGAgcGCGgGGGCCGccgucagCGCGGCCCc -3'
miRNA:   3'- -CUacUGUgCUCGGCuaua---GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 49739 0.66 0.979661
Target:  5'- --cGACG-GGGUCGggGUCGCGgcggggGCCCg -3'
miRNA:   3'- cuaCUGUgCUCGGCuaUAGCGC------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 71588 0.66 0.979661
Target:  5'- --cGACACGAGCCccgcgCGCGuacaGCCg -3'
miRNA:   3'- cuaCUGUGCUCGGcuauaGCGC----UGGg -5'
21729 3' -52.9 NC_004812.1 + 153260 0.66 0.979661
Target:  5'- --cGGCGgGGGCCGGgg-CGCGgggcgcggcgGCCCc -3'
miRNA:   3'- cuaCUGUgCUCGGCUauaGCGC----------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 8024 0.66 0.979661
Target:  5'- gGggGGCGCGGGCCGGccucCGcCGGCaCCc -3'
miRNA:   3'- -CuaCUGUGCUCGGCUaua-GC-GCUG-GG- -5'
21729 3' -52.9 NC_004812.1 + 38925 0.66 0.979661
Target:  5'- gGggGGCGCGGGCCGGccucCGcCGGCaCCc -3'
miRNA:   3'- -CuaCUGUGCUCGGCUaua-GC-GCUG-GG- -5'
21729 3' -52.9 NC_004812.1 + 153061 0.66 0.979437
Target:  5'- --cGGCGCgcaagaaGAGCCGGcccggcgcCGCGGCCCc -3'
miRNA:   3'- cuaCUGUG-------CUCGGCUaua-----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 27553 0.66 0.979437
Target:  5'- --cGGCGCgcaagaaGAGCCGGcccggcgcCGCGGCCCc -3'
miRNA:   3'- cuaCUGUG-------CUCGGCUaua-----GCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.