miRNA display CGI


Results 21 - 40 of 624 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 73099 0.66 0.840729
Target:  5'- aCCGGgccugcucgcgcaCCGCCugGCCGucGCGCUccccGACGa -3'
miRNA:   3'- -GGCUa------------GGCGGugUGGC--CGCGA----CUGCc -5'
21729 5' -59.3 NC_004812.1 + 50790 0.66 0.836818
Target:  5'- cCCGcgCCGCCGCcgGCCGGagcccccacccccaaGCcccccggcGACGGg -3'
miRNA:   3'- -GGCuaGGCGGUG--UGGCCg--------------CGa-------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 25411 0.66 0.836031
Target:  5'- gCCGGagaCCGCCGCG-CGGCGUUcGCGc -3'
miRNA:   3'- -GGCUa--GGCGGUGUgGCCGCGAcUGCc -5'
21729 5' -59.3 NC_004812.1 + 58338 0.66 0.836031
Target:  5'- gUCGAUCgCGUC-CACCaGCGC--GCGGg -3'
miRNA:   3'- -GGCUAG-GCGGuGUGGcCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 32211 0.66 0.836031
Target:  5'- aCGGcCCGCUGCACCaGCGCgagGAUc- -3'
miRNA:   3'- gGCUaGGCGGUGUGGcCGCGa--CUGcc -5'
21729 5' -59.3 NC_004812.1 + 133200 0.66 0.836031
Target:  5'- gCCGAcgCCGCCGgacgcccguCGCCGGaCGCUcgcccGcCGGg -3'
miRNA:   3'- -GGCUa-GGCGGU---------GUGGCC-GCGA-----CuGCC- -5'
21729 5' -59.3 NC_004812.1 + 150919 0.66 0.836031
Target:  5'- gCCGGagaCCGCCGCG-CGGCGUUcGCGc -3'
miRNA:   3'- -GGCUa--GGCGGUGUgGCCGCGAcUGCc -5'
21729 5' -59.3 NC_004812.1 + 31271 0.66 0.836031
Target:  5'- cUCGG-CCGCC--GCCGGCGCaucccGCGGc -3'
miRNA:   3'- -GGCUaGGCGGugUGGCCGCGac---UGCC- -5'
21729 5' -59.3 NC_004812.1 + 43683 0.66 0.836031
Target:  5'- gCGGcUCCGCguuguggguCGgGCCGGCGCaggucugGGCGGc -3'
miRNA:   3'- gGCU-AGGCG---------GUgUGGCCGCGa------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 7692 0.66 0.836031
Target:  5'- gCCGAcgCCGCCGgacgcccguCGCCGGaCGCUcgcccGcCGGg -3'
miRNA:   3'- -GGCUa-GGCGGU---------GUGGCC-GCGA-----CuGCC- -5'
21729 5' -59.3 NC_004812.1 + 97767 0.66 0.836031
Target:  5'- gUGGUCUuuGCCgGCGCCGGCGCcaacgccuCGGa -3'
miRNA:   3'- gGCUAGG--CGG-UGUGGCCGCGacu-----GCC- -5'
21729 5' -59.3 NC_004812.1 + 95512 0.66 0.836031
Target:  5'- gCGGggcgCCGCCucgACcCCGGCGg-GGCGGc -3'
miRNA:   3'- gGCUa---GGCGG---UGuGGCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 124396 0.66 0.836031
Target:  5'- -aGAUCC-UCGCGCUGGUGCa-GCGGg -3'
miRNA:   3'- ggCUAGGcGGUGUGGCCGCGacUGCC- -5'
21729 5' -59.3 NC_004812.1 + 56908 0.66 0.836031
Target:  5'- gCCGcggCCGCgACcgaguccCUGGCGgaGGCGGg -3'
miRNA:   3'- -GGCua-GGCGgUGu------GGCCGCgaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 136311 0.66 0.836031
Target:  5'- gCGcgCgCGCUGCGCCGGCGCgc-CGc -3'
miRNA:   3'- gGCuaG-GCGGUGUGGCCGCGacuGCc -5'
21729 5' -59.3 NC_004812.1 + 121867 0.66 0.836031
Target:  5'- cCCGGggCCGCCccaggacgGCgAUCGGCGgCUGcCGGu -3'
miRNA:   3'- -GGCUa-GGCGG--------UG-UGGCCGC-GACuGCC- -5'
21729 5' -59.3 NC_004812.1 + 370 0.66 0.836031
Target:  5'- cUCGG-CCGCC--GCCGGCGCaucccGCGGc -3'
miRNA:   3'- -GGCUaGGCGGugUGGCCGCGac---UGCC- -5'
21729 5' -59.3 NC_004812.1 + 98304 0.66 0.836031
Target:  5'- uCCGGggcUCCGgcggCGCGCgGGUGCUGGCu- -3'
miRNA:   3'- -GGCU---AGGCg---GUGUGgCCGCGACUGcc -5'
21729 5' -59.3 NC_004812.1 + 83331 0.66 0.836031
Target:  5'- gCGGUCCGUC-CACuCGGUGacgcaCUGuCGGg -3'
miRNA:   3'- gGCUAGGCGGuGUG-GCCGC-----GACuGCC- -5'
21729 5' -59.3 NC_004812.1 + 124977 0.66 0.836031
Target:  5'- aCGAgcUCCuGCgGCGcuuuCCGGCGCUGGaGGc -3'
miRNA:   3'- gGCU--AGG-CGgUGU----GGCCGCGACUgCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.