miRNA display CGI


Results 21 - 40 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 60960 0.66 0.455701
Target:  5'- gGUCCCCCcgaGCCCCGUggugCGGgaCCC-GACg -3'
miRNA:   3'- -UAGGGGGag-UGGGGCG----GCC--GGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 111158 0.66 0.455701
Target:  5'- --gCUCCUCGCCCCcCCGGCggagcugaaCCuGACg -3'
miRNA:   3'- uagGGGGAGUGGGGcGGCCG---------GGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 112497 0.66 0.455701
Target:  5'- cUCCCCCgga-CCCGaCGaCCCAGACu -3'
miRNA:   3'- uAGGGGGagugGGGCgGCcGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 76970 0.66 0.455701
Target:  5'- uUCCCgCCggGCCggggCCGCCGGCCaCGGcCg -3'
miRNA:   3'- uAGGG-GGagUGG----GGCGGCCGG-GUCuG- -5'
21730 3' -66.2 NC_004812.1 + 125607 0.66 0.455701
Target:  5'- -gCUCCCg-GCCCCGCgCGcGCCCcGGCc -3'
miRNA:   3'- uaGGGGGagUGGGGCG-GC-CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 143772 0.66 0.447063
Target:  5'- uUCCUCCcgCGCCCCaUCGGCCCu--- -3'
miRNA:   3'- uAGGGGGa-GUGGGGcGGCCGGGucug -5'
21730 3' -66.2 NC_004812.1 + 35310 0.66 0.447063
Target:  5'- gGUCCCgC-CGCaCUCGCCuGCCCgAGGCg -3'
miRNA:   3'- -UAGGGgGaGUG-GGGCGGcCGGG-UCUG- -5'
21730 3' -66.2 NC_004812.1 + 134856 0.66 0.447063
Target:  5'- -aCUCCCUgACCCCGCCcGGCgacgucaccacgUgGGGCg -3'
miRNA:   3'- uaGGGGGAgUGGGGCGG-CCG------------GgUCUG- -5'
21730 3' -66.2 NC_004812.1 + 125819 0.66 0.447063
Target:  5'- ---gCCCUCGgCCCG-CGGCCCcgcAGGCg -3'
miRNA:   3'- uaggGGGAGUgGGGCgGCCGGG---UCUG- -5'
21730 3' -66.2 NC_004812.1 + 679 0.66 0.447063
Target:  5'- -aCCCCggCGCuCCCG-CGGCCCGGcCu -3'
miRNA:   3'- uaGGGGgaGUG-GGGCgGCCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 36932 0.66 0.447063
Target:  5'- -gCUCCCgcaGCCCCGCgGGgaagCCGGGCg -3'
miRNA:   3'- uaGGGGGag-UGGGGCGgCCg---GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 58362 0.66 0.447063
Target:  5'- gGUCCCggCCUCcagggccgcgccGCCCCG-CGGagaCCAGGCg -3'
miRNA:   3'- -UAGGG--GGAG------------UGGGGCgGCCg--GGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 4409 0.66 0.447063
Target:  5'- gGUCCCgC-CGCaCUCGCCuGCCCgAGGCg -3'
miRNA:   3'- -UAGGGgGaGUG-GGGCGGcCGGG-UCUG- -5'
21730 3' -66.2 NC_004812.1 + 126187 0.66 0.447063
Target:  5'- -aCCCCggCGCuCCCG-CGGCCCGGcCu -3'
miRNA:   3'- uaGGGGgaGUG-GGGCgGCCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 108896 0.66 0.447063
Target:  5'- -gCCgCCUCGCgCCgGCCGggcGCCCGGGu -3'
miRNA:   3'- uaGGgGGAGUG-GGgCGGC---CGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 106328 0.66 0.447063
Target:  5'- -gCCCCCgcgCAgaCCCGCCGGUUCGcgcccGGCg -3'
miRNA:   3'- uaGGGGGa--GUg-GGGCGGCCGGGU-----CUG- -5'
21730 3' -66.2 NC_004812.1 + 155676 0.66 0.447063
Target:  5'- -aCCCCCaggACCCCGgCGacCCCGGACc -3'
miRNA:   3'- uaGGGGGag-UGGGGCgGCc-GGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 58517 0.66 0.446204
Target:  5'- -gCCCCUguUCuCCCCGCCcccgauagcccggGGCCCGG-Cu -3'
miRNA:   3'- uaGGGGG--AGuGGGGCGG-------------CCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 69838 0.66 0.444489
Target:  5'- gGUCgCCCUCGCgCCCGCgucgcgcugcgccaUGGCCgacgCGGACc -3'
miRNA:   3'- -UAGgGGGAGUG-GGGCG--------------GCCGG----GUCUG- -5'
21730 3' -66.2 NC_004812.1 + 36616 0.66 0.439367
Target:  5'- -gCCCCCgcccgucucguggcgCGCCaCCuggaGCUGGCCCAGGa -3'
miRNA:   3'- uaGGGGGa--------------GUGG-GG----CGGCCGGGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.