miRNA display CGI


Results 21 - 40 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 140924 0.66 0.976452
Target:  5'- cCUuCACGGAc-GCGGCGuuGCGaAGGCGGc -3'
miRNA:   3'- -GAuGUGCCUcuCGCUGC--UGC-UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 49970 0.66 0.973932
Target:  5'- cCUGUACGG-GAGCGGCGACuccgguGAGcUGGc -3'
miRNA:   3'- -GAUGUGCCuCUCGCUGCUG------CUCuGCC- -5'
21730 5' -54.2 NC_004812.1 + 103236 0.66 0.973932
Target:  5'- cCUcCGCGaGcaGGAGCGGCGGCcGGGCGa -3'
miRNA:   3'- -GAuGUGC-C--UCUCGCUGCUGcUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 130174 0.66 0.973932
Target:  5'- ----uCGGGGA-CGAgGACGAGaACGGg -3'
miRNA:   3'- gauguGCCUCUcGCUgCUGCUC-UGCC- -5'
21730 5' -54.2 NC_004812.1 + 11662 0.66 0.973932
Target:  5'- -cGCACGGGGcgucCGcCGGCGAG-CGGc -3'
miRNA:   3'- gaUGUGCCUCuc--GCuGCUGCUCuGCC- -5'
21730 5' -54.2 NC_004812.1 + 38597 0.66 0.973932
Target:  5'- -gGCGCGGGGGucGCGcCGAgucCGcGGCGGg -3'
miRNA:   3'- gaUGUGCCUCU--CGCuGCU---GCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 16780 0.66 0.973932
Target:  5'- -gACGCGuGGGGCGGC--CGAGGCGa -3'
miRNA:   3'- gaUGUGCcUCUCGCUGcuGCUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 7696 0.66 0.973932
Target:  5'- -gGCGCGGGGGucGCGcCGAgucCGcGGCGGg -3'
miRNA:   3'- gaUGUGCCUCU--CGCuGCU---GCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 54747 0.66 0.973932
Target:  5'- -gGCGCGGGGccgcauccccGCGGCGcGCG-GGCGGc -3'
miRNA:   3'- gaUGUGCCUCu---------CGCUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 40232 0.66 0.973932
Target:  5'- -cGCGCcuGGccGGCGGCGACGAGcCGa -3'
miRNA:   3'- gaUGUG--CCucUCGCUGCUGCUCuGCc -5'
21730 5' -54.2 NC_004812.1 + 39537 0.66 0.973932
Target:  5'- gCUGCucgACGGGGuGCGggccgucgcggGCGAUGAG-CGGc -3'
miRNA:   3'- -GAUG---UGCCUCuCGC-----------UGCUGCUCuGCC- -5'
21730 5' -54.2 NC_004812.1 + 92903 0.66 0.973932
Target:  5'- -aGCGCGuGuGGGuCGAgGAuccCGAGGCGGa -3'
miRNA:   3'- gaUGUGC-CuCUC-GCUgCU---GCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 48155 0.66 0.973932
Target:  5'- -gGCGCGGcgccGGGCGGCGGCc--GCGGc -3'
miRNA:   3'- gaUGUGCCu---CUCGCUGCUGcucUGCC- -5'
21730 5' -54.2 NC_004812.1 + 83786 0.66 0.973932
Target:  5'- aCUGCAgCGGcccgucgguGGGGUGAC--CGGGGCGGg -3'
miRNA:   3'- -GAUGU-GCC---------UCUCGCUGcuGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 5124 0.66 0.973932
Target:  5'- ----cCGGGGGGCgGGCG-CGgAGGCGGg -3'
miRNA:   3'- gauguGCCUCUCG-CUGCuGC-UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 36025 0.66 0.973932
Target:  5'- ----cCGGGGGGCgGGCG-CGgAGGCGGg -3'
miRNA:   3'- gauguGCCUCUCG-CUGCuGC-UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 45748 0.66 0.97367
Target:  5'- gCUcCGCGGAGcccgaggggagacGGCGAgGGCgucuccucggGAGACGGu -3'
miRNA:   3'- -GAuGUGCCUC-------------UCGCUgCUG----------CUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 74322 0.66 0.97367
Target:  5'- -cGCGCGGGccucGAGCGcccgaacguCGACGAGcaggggcGCGGg -3'
miRNA:   3'- gaUGUGCCU----CUCGCu--------GCUGCUC-------UGCC- -5'
21730 5' -54.2 NC_004812.1 + 13936 0.66 0.971222
Target:  5'- -gACGCGGucuGCGugGGCGAGcccACGc -3'
miRNA:   3'- gaUGUGCCucuCGCugCUGCUC---UGCc -5'
21730 5' -54.2 NC_004812.1 + 131073 0.66 0.971222
Target:  5'- --cCGCGGAGAGCGugcACG-CGuG-CGGg -3'
miRNA:   3'- gauGUGCCUCUCGC---UGCuGCuCuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.